CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06239
KRH10001
KRH23330
KRH44167
KRH47141
KRH47662
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	KRH69305	AT1G14340.1	21798944
AT1G71480.1	KRH06239	AT1G54060.1	21798944
AT1G71480.1	KRH47662	AT1G54060.1	21798944
AT1G71480.1	KRH10001	AT3G13710.1	21798944
AT1G71480.1	KRH23330	AT3G13710.1	21798944
AT1G71480.1	KRH44167	AT3G13710.1	21798944
AT1G71480.1	KRH47141	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77740	Soybean	cytosol	72.69	80.49
KXG40432	Sorghum	peroxisome	40.09	59.09
AT1G71480.1	Thale cress	plastid	50.22	52.78
Solyc11g042620.1.1	Tomato	plastid	51.1	51.1
TraesCS2A01G046200.1	Wheat	mitochondrion	42.73	48.74
CDX72810	Canola	plastid	51.1	48.54
CDY36691	Canola	plastid	43.17	48.04
TraesCS2B01G058300.1	Wheat	mitochondrion	43.17	48.04
TraesCSU01G023200.1	Wheat	plastid	43.17	47.57
HORVU4Hr1G032500.2	Barley	cytosol	12.78	46.03
VIT_18s0001g05960.t01	Wine grape	plastid	52.86	45.98
CDX68309	Canola	plastid	42.73	45.97
KXG32164	Sorghum	plastid	42.73	44.7
Zm00001d040242_P001	Maize	plastid	43.61	44.0
GSMUA_Achr10P...	Banana	plastid	42.73	42.54
HORVU2Hr1G007080.13	Barley	cytosol	42.73	39.59
Bra003923.1-P	Field mustard	plastid	24.67	35.9
Os09t0266000-02	Rice	plastid	45.81	31.42
KRH64522	Soybean	plastid	20.7	17.74
KRH77576	Soybean	plastid	19.82	15.79

Protein Annotations

EMBL:ACUP02006733	EnsemblPlants:KRH27793	EnsemblPlantsGene:GLYMA_11G014300	EntrezGene:100813246	Gene3D:3.10.450.50	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	InterPro:NTF2	InterPro:NTF2-like_dom_sf
PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	PFAM:PF02136	ProteinID:KRH27793	ProteinID:KRH27793.1	SEG:seg
SUPFAM:SSF54427	UniParc:UPI000233D3FD	UniProt:I1LG46	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr11:+:993023..995622

Molecular Weight (calculated)

25366.1 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.098

Length

227 amino acids

Sequence
(BLAST)

001: MFIIVSTTST CLLLNNSASS PLLLSCCIDS VKYGSFALPK FERRRRSKWR AVDGSGEKQS AVTVAATTTS TFDDDNDVVD SASAVLKNFY GGINAHDVDS
101: VEYLIAENCV YEDLVFPRPF VGRKEILEFF KKFTNSTSKD LQFVIDDLST EDSSSVGVIW HLEWKGKPFP FSKGCSFYRL EVINGKRQIT YGRDCVEPAI
201: KPGDATLAAI RSVTWLLQQF PQLANWL

Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.