Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71480.1 | EES12950 | AT1G14340.1 | 21798944 |
| AT1G71480.1 | EES12241 | AT1G54060.1 | 21798944 |
| AT1G71480.1 | KXG30464 | AT1G54060.1 | 21798944 |
| AT1G71480.1 | EES00126 | AT3G13710.1 | 21798944 |
| AT1G71480.1 | OQU77594 | AT3G13710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32164 | Sorghum | plastid | 83.77 | 59.45 |
| Zm00001d040242_P001 | Maize | plastid | 79.22 | 54.22 |
| TraesCS2A01G046200.1 | Wheat | mitochondrion | 69.48 | 53.77 |
| TraesCS2B01G058300.1 | Wheat | mitochondrion | 68.18 | 51.47 |
| TraesCSU01G023200.1 | Wheat | plastid | 68.83 | 51.46 |
| HORVU4Hr1G032500.2 | Barley | cytosol | 18.83 | 46.03 |
| KRH77740 | Soybean | cytosol | 59.09 | 44.39 |
| HORVU2Hr1G007080.13 | Barley | cytosol | 69.48 | 43.67 |
| Solyc11g042620.1.1 | Tomato | plastid | 62.34 | 42.29 |
| AT1G71480.1 | Thale cress | plastid | 57.14 | 40.74 |
| GSMUA_Achr10P... | Banana | plastid | 59.74 | 40.35 |
| KRH27793 | Soybean | plastid | 59.09 | 40.09 |
| CDY36691 | Canola | plastid | 51.95 | 39.22 |
| CDX68309 | Canola | plastid | 50.65 | 36.97 |
| CDX72810 | Canola | plastid | 56.49 | 36.4 |
| VIT_18s0001g05960.t01 | Wine grape | plastid | 60.39 | 35.63 |
| Os09t0266000-02 | Rice | plastid | 69.48 | 32.33 |
| Bra003923.1-P | Field mustard | plastid | 31.17 | 30.77 |
| KXG37063 | Sorghum | plastid | 25.97 | 17.17 |
Protein Annotations
| EnsemblPlants:KXG40432 | EnsemblPlantsGene:SORBI_3001G544000 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:SnoaL-like | PANTHER:PTHR33698 |
| PANTHER:PTHR33698:SF3 | PFAM:PF12680 | ProteinID:KXG40432 | ProteinID:KXG40432.1 | SUPFAM:SSF54427 | UniParc:UPI00081AD389 |
| UniProt:A0A1B6QR85 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:80757746..80758521
Molecular Weight (calculated)
17387.0 Da
IEP (calculated)
5.951
GRAVY (calculated)
0.090
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLSRIKTAV DVVRAFYDGM NRREVAAVEP LIAEGCVYED LVFPRPFVGR ERIIGFFGKF MGTISLDLQF VIDDISADDS VAVGVTWHLE WRGKPFPFSR
101: GCSFYRLLAG SESESQQYGR DCVEPAAKPR DLALVIIRGV TWILERFPSL ASRF
101: GCSFYRLLAG SESESQQYGR DCVEPAAKPR DLALVIIRGV TWILERFPSL ASRF
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.