Factsheet for Zm00001d034954_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d010603_P002
Zm00001d011680_P002
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d017284_P001
Zm00001d025871_P001
Zm00001d032683_P001
Zm00001d037747_P001
Zm00001d039213_P001
Zm00001d039455_P002
Zm00001d042846_P001
Zm00001d043018_P001
Zm00001d043705_P005
Zm00001d051172_P001
Zm00001d052322_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	Zm00001d037747_P001	AT1G55190.1	21798944
AT2G30880.1	Zm00001d039455_P002	AT1G55190.1	21798944
AT2G30880.1	Zm00001d039213_P001	AT3G54120.1	21798944
AT2G30880.1	Zm00001d042846_P001	AT3G54120.1	21798944
AT2G30880.1	Zm00001d011680_P002	AT4G00980.1	21798944
AT2G30880.1	Zm00001d043705_P005	AT4G00980.1	21798944
AT2G30880.1	Zm00001d000358_P001	AT4G30080.1	21798944
AT2G30880.1	Zm00001d014013_P002	AT4G30080.1	21798944
AT2G30880.1	Zm00001d014507_P002	AT4G30080.1	21798944
AT2G30880.1	Zm00001d017284_P001	AT4G30080.1	21798944
AT2G30880.1	Zm00001d025871_P001	AT4G30080.1	21798944
AT2G30880.1	Zm00001d032683_P001	AT4G30080.1	21798944
AT2G30880.1	Zm00001d051172_P001	AT4G30080.1	21798944
AT2G30880.1	Zm00001d010603_P002	AT5G01640.1	21798944
AT2G30880.1	Zm00001d043018_P001	AT5G01640.1	21798944
AT2G30880.1	Zm00001d052322_P001	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013589_P006	Maize	cytosol, plastid	82.2	94.2
Os03t0666200-01	Rice	plasma membrane	79.58	91.2
TraesCS4A01G294800.1	Wheat	cytosol, plastid	78.53	90.0
TraesCS4D01G017000.2	Wheat	cytosol, plastid	78.36	89.8
HORVU4Hr1G002870.1	Barley	cytosol	67.71	88.18
TraesCS4B01G018800.2	Wheat	cytosol, plastid	78.71	83.99
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	63.35	72.89
Os12t0505950-00	Rice	cytosol	10.12	72.5
Os05t0128700-00	Rice	cytosol	10.12	72.5
Os05t0153901-00	Rice	cytosol	9.6	68.75
GSMUA_Achr9P10020_001	Banana	cytosol	59.16	68.48
VIT_12s0028g00830.t01	Wine grape	cytosol	59.51	68.2
KRH73621	Soybean	endoplasmic reticulum	56.72	66.33
KRH14510	Soybean	cytosol	56.37	65.92
Zm00001d007849_P002	Maize	cytosol, plastid	51.66	62.58
AT2G30880.1	Thale cress	cytosol, plastid	54.8	62.3
CDX97786	Canola	cytosol, plastid	54.28	62.08
Bra021674.1-P	Field mustard	cytosol	54.1	61.63
CDY29635	Canola	cytosol, plastid	54.1	61.63
Solyc05g021100.2.1	Tomato	cytosol, nucleus, plastid	47.12	61.5
Zm00001d018772_P001	Maize	peroxisome	9.6	56.7
Bra022817.1-P	Field mustard	cytosol	24.96	51.25
CDY23978	Canola	cytosol	36.65	45.06
Zm00001d033157_P001	Maize	mitochondrion	6.81	24.84

Protein Annotations

EMBL:BT064921	EnsemblPlants:Zm00001d034954_P001	EnsemblPlants:Zm00001d034954_T001	EnsemblPlantsGene:Zm00001d034954	EntrezGene:100284752	Gene3D:2.30.29.30
InterPro:IPR001849	InterPro:IPR011993	InterPro:PH-like_dom_sf	InterPro:PH_domain	ncoils:Coil	PANTHER:PTHR24356
PANTHER:PTHR24356:SF215	PFAM:PF00169	PFscan:PS50003	ProteinID:ONM11904.1	SEG:seg	SMART:SM00233
SUPFAM:SSF50729	UniParc:UPI000194B00B	UniProt:C0P9F2	MapMan:27.4.3.3	:	:

Description

Pleckstrin homology (PH) domain-containing protein

Coordinates

chr1:+:306615432..306619937

Molecular Weight (calculated)

62544.9 Da

IEP (calculated)

5.950

GRAVY (calculated)

-0.477

Length

573 amino acids

Sequence
(BLAST)

001: MTDSSRVVPA SLPEAFPAAR FPPIDLYALP TGGSRTSTNL PSRPARRRRR LAVRFRPPKP YYLLPSSPAS SMATNGSSPR VRDTESSLEK VKRQLSSGSG
101: RYLLQGPLLK RSETLRKWNE RWVILDPTSG KMEYKLRRNE TAIKGTILFD ASSTITLSPV NFQGMPKYNG CCFYIGTPQK KDYFLCAETP GAAKAWVSTL
201: HATQLVLRAH KEAVNSLAGN GSPATLGTVA TAVANANATA MEATKEIEAA LKVSMRAALG LDTNNSNEGQ LDDLTIMKET LRVKDEELQH LAKDIRSRDA
301: TIKEIADKLT ETAEAAEAAA SAAHTMDEQR QLLCSEIERL KQALERQIEQ SVVKLRQSEE KVISLSKEKE QLMKERDAAF QEAHMWRIEL VKAREQAVIQ
401: EATIARAEEK ARVSEADAAA RIKEAAEKLH TVEKEKEELL ALVGVLQSQV LREQSSTKQV CEERSESCSG ADNSPLLTKH VDASDDDVDK ACVSDSRSVP
501: VSSDSTEVQL AVDGVDIRPV GDAEWSSFQQ PEALIADVRE VSPEADGGSL DIPVVNPPPV SDHIQGGGGA THP

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.