CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67589
CDX68620
CDX73507
CDX78209
CDX80758
CDY07161
CDY08228
CDY24050
CDY26125
CDY30172
CDY33064
CDY43553
CDY46728
CDY48492
CDY51584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	CDY08228	AT1G55190.1	21798944
AT2G30880.1	CDY24050	AT1G55190.1	21798944
AT2G30880.1	CDY26125	AT1G55190.1	21798944
AT2G30880.1	CDY33064	AT1G55190.1	21798944
AT2G30880.1	CDX67589	AT3G54120.1	21798944
AT2G30880.1	CDX73507	AT3G54120.1	21798944
AT2G30880.1	CDX78209	AT3G54120.1	21798944
AT2G30880.1	CDY51584	AT3G54120.1	21798944
AT2G30880.1	CDY07161	AT4G00980.1	21798944
AT2G30880.1	CDY48492	AT4G00980.1	21798944
AT2G30880.1	CDX68620	AT4G30080.1	21798944
AT2G30880.1	CDY30172	AT4G30080.1	21798944
AT2G30880.1	CDY43553	AT4G30080.1	21798944
AT2G30880.1	CDY46728	AT4G30080.1	21798944
AT2G30880.1	CDX80758	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84814	Canola	cytosol	37.98	90.31
Bra022817.1-P	Field mustard	cytosol	47.0	78.49
CDX97786	Canola	cytosol, plastid	68.88	64.07
CDY29635	Canola	cytosol, plastid	68.88	63.82
AT2G30880.1	Thale cress	cytosol, plastid	68.88	63.69
Os12t0505950-00	Rice	cytosol	9.66	56.25
Os05t0128700-00	Rice	cytosol	9.66	56.25
Zm00001d018772_P001	Maize	peroxisome	11.59	55.67
Os05t0153901-00	Rice	cytosol	9.01	52.5
Solyc05g021100.2.1	Tomato	cytosol, nucleus, plastid	47.21	50.11
VIT_12s0028g00830.t01	Wine grape	cytosol	53.65	50.0
KRH73621	Soybean	endoplasmic reticulum	51.72	49.18
KRH14510	Soybean	cytosol	51.5	48.98
HORVU4Hr1G002870.1	Barley	cytosol	42.92	45.45
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	46.57	43.57
KXG37877	Sorghum	cytosol	45.92	42.8
Os03t0666200-01	Rice	plasma membrane	45.28	42.2
Zm00001d013589_P006	Maize	cytosol, plastid	44.64	41.6
TraesCS4A01G294800.1	Wheat	cytosol, plastid	44.21	41.2
TraesCS4D01G017000.2	Wheat	cytosol, plastid	44.21	41.2
CDX84813	Canola	mitochondrion	9.01	41.18
TraesCS2B01G267300.1	Wheat	cytosol	42.06	41.09
Zm00001d007849_P002	Maize	cytosol, plastid	41.63	41.01
TraesCS2D01G255300.2	Wheat	cytosol	42.27	40.53
Os07t0138100-01	Rice	cytosol	42.06	40.5
GSMUA_Achr9P10020_001	Banana	cytosol	42.92	40.4
TraesCS2A01G254800.2	Wheat	cytosol	42.06	40.33
TraesCS4B01G018800.2	Wheat	cytosol, plastid	44.21	38.36
KXG34371	Sorghum	mitochondrion	40.34	37.08
HORVU2Hr1G060900.13	Barley	plastid	38.84	36.79
Zm00001d034954_P001	Maize	extracellular	45.06	36.65
Zm00001d033157_P001	Maize	mitochondrion	5.36	15.92

Protein Annotations

EnsemblPlants:CDY23978	EnsemblPlantsGene:GSBRNA2T00024490001	ncoils:Coil	PANTHER:PTHR24356	PANTHER:PTHR24356:SF306	ProteinID:CDY23978
ProteinID:CDY23978.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE427D	UniProt:A0A078GH58	MapMan:27.4.3.3

Description

BnaC03g17130DBnaC03g17130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH58]

Coordinates

chrLK032152:+:268307..270214

Molecular Weight (calculated)

51826.4 Da

IEP (calculated)

6.613

GRAVY (calculated)

-0.465

Length

466 amino acids

Sequence
(BLAST)

001: MFAICISKTQ NNNLKTVYIN HTSADNRGCV IRRRRNGVSI NDRNDRLYRR EINCANSATG PTSFILSTYT AFLFLTFHNK PVSFFFSSGG FPNIMVAVSI
101: LVHHRRKITF CVLETPGAPR AWVTTLHATQ LVLKVHKEAV DSLSGSGSST LGSVAAANET ALECSKEIQA AMQVSLRNAL NISAMKPIDG PLDDLTIMKS
201: LARALRSCES TTKEIADKLS ETAEAAVAAA SAAHTMDEQR KIVSMEFERL SKDSERQQEA AKLKLKELEE KTYSLSKEKD QLVKERDSAL QEAHMWRSEL
301: AKARERVVIL EGAVVRAEEK ARVAEASGEA KAKEASQREA TAWTEKQELL AYVNMLQTQL QRQQLETKQV FEEKTESTNG ETPLLPMTKE TEKDVDKACL
401: SVSRTASMPG ENVVHMSEDE VVGENKWNDI QATEARVSDV REISERDRSN SLDITVVSPE SDVPRQ

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.