Factsheet for VIT_02s0012g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
extracellular 3
plasma membrane 4
endoplasmic reticulum 2
vacuole 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_07s0031g02730.t01
VIT_10s0003g01830.t01
VIT_11s0016g03780.t01
VIT_15s0046g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT5G01430.1	VIT_02s0025g00640.t01	AT4G11220.1	21798944
AT5G01430.1	VIT_07s0031g02730.t01	AT4G11220.1	21798944
AT5G01430.1	VIT_15s0046g01760.t01	AT4G11220.1	21798944
AT5G01430.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G01430.1	Thale cress	plasma membrane	90.0	90.0
AT3G49420.2	Thale cress	plasma membrane	90.0	90.0
Bra005686.1-P	Field mustard	plasma membrane	88.57	88.57
CDX80773	Canola	plasma membrane	88.57	88.57
CDY11201	Canola	plasma membrane	88.57	88.57
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	87.14	87.14
PGSC0003DMT400062004	Potato	plasma membrane	87.14	87.14
Bra028903.1-P	Field mustard	plasma membrane	86.43	86.43
CDY04837	Canola	plasma membrane	86.43	86.43
PGSC0003DMT400054623	Potato	plasma membrane	82.86	85.93
KRH73542	Soybean	extracellular, plasma membrane, vacuole	83.57	83.57
TraesCS4D01G252900.1	Wheat	plasma membrane	83.57	83.57
TraesCS4B01G252600.1	Wheat	plasma membrane	83.57	83.57
TraesCS4A01G051600.1	Wheat	plasma membrane	83.57	83.57
KRH14583	Soybean	extracellular, plasma membrane, vacuole	82.86	82.86
KRH50610	Soybean	extracellular, plasma membrane, vacuole	82.14	82.14
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	82.14	82.14
Zm00001d028040_P002	Maize	plasma membrane	81.43	81.43
Os03t0209400-01	Rice	plasma membrane	80.71	80.71
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	80.71	80.71
GSMUA_AchrUn_...	Banana	plasma membrane	78.57	78.57
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	77.14	77.14
GSMUA_Achr4P06120_001	Banana	plasma membrane	75.0	75.0
EER97480	Sorghum	plasma membrane	72.14	72.14
TraesCS2D01G191300.1	Wheat	plasma membrane	71.43	71.43
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	67.86	66.43
Os07t0593400-00	Rice	extracellular, plasma membrane	51.43	64.86
Zm00001d037011_P001	Maize	extracellular	29.29	63.08
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	70.71	62.66
KRG89688	Soybean	plasma membrane	83.57	60.62
Zm00001d048122_P003	Maize	plasma membrane	81.43	56.72
HORVU2Hr1G034610.1	Barley	extracellular	62.14	54.38
HORVU4Hr1G069200.3	Barley	plastid	82.86	53.46
VIT_05s0124g00090.t01	Wine grape	cytosol, plasma membrane, vacuole	45.0	39.62

Protein Annotations

EntrezGene:100255785	wikigene:100255785	MapMan:35.1	ProteinID:CBI33953	ProteinID:CBI33953.3	UniProt:D7TTH3
EMBL:FN596247	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	EntrezGene:LOC100255785	wikigene:LOC100255785	PFAM:PF04178	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
TIGR:TC65893	TMHMM:TMhelix	UniParc:UPI00015C91DB	ArrayExpress:VIT_02s0012g00510	EnsemblPlantsGene:VIT_02s0012g00510	EnsemblPlants:VIT_02s0012g00510.t01
InterPro:Vesicle_transpt_Got1/SFT2	unigene:Vvi.2265	RefSeq:XP_002282266	RefSeq:XP_002282266.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:6343740..6352807

Molecular Weight (calculated)

15947.1 Da

IEP (calculated)

10.945

GRAVY (calculated)

0.784

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDRK KIGLGLTAFG VFFSFLGIVF LFDKGLLAMG NILFISGVTL TIGLKSTVQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LEAYGFIVLF
101: SGFWPTLAVF LQKIPFLGWV FQQPFVRSFF DKYRGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.