Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 2
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc08g081730.2.1 | |
| Solyc12g007130.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054623 | Potato | plasma membrane | 95.0 | 98.52 |
| AT3G49420.2 | Thale cress | plasma membrane | 87.14 | 87.14 |
| AT5G01430.1 | Thale cress | plasma membrane | 87.14 | 87.14 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 87.14 | 87.14 |
| CDX80773 | Canola | plasma membrane | 85.71 | 85.71 |
| Bra005686.1-P | Field mustard | plasma membrane | 85.0 | 85.0 |
| CDY11201 | Canola | plasma membrane | 85.0 | 85.0 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 84.29 | 84.29 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 84.29 | 84.29 |
| TraesCS4B01G252600.1 | Wheat | plasma membrane | 83.57 | 83.57 |
| TraesCS4A01G051600.1 | Wheat | plasma membrane | 83.57 | 83.57 |
| TraesCS4D01G252900.1 | Wheat | plasma membrane | 83.57 | 83.57 |
| Bra028903.1-P | Field mustard | plasma membrane | 82.86 | 82.86 |
| CDY04837 | Canola | plasma membrane | 82.86 | 82.86 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 82.86 | 82.86 |
| EER95301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 82.14 | 82.14 |
| Os03t0209400-01 | Rice | plasma membrane | 82.14 | 82.14 |
| Zm00001d028040_P002 | Maize | plasma membrane | 81.43 | 81.43 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 79.29 | 79.29 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 78.57 | 78.57 |
| CDY21217 | Canola | plasma membrane | 77.14 | 77.14 |
| CDY49931 | Canola | plasma membrane | 72.86 | 75.56 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 75.0 | 75.0 |
| Os10t0337600-01 | Rice | extracellular, plasma membrane, vacuole | 74.29 | 74.29 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 69.29 | 69.29 |
| EER97480 | Sorghum | plasma membrane | 68.57 | 68.57 |
| Bra021367.1-P | Field mustard | plasma membrane | 71.43 | 67.57 |
| Zm00001d022026_P001 | Maize | cytosol, plasma membrane, vacuole | 65.0 | 63.64 |
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 50.0 | 63.06 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 68.57 | 60.76 |
| KRG89688 | Soybean | plasma membrane | 82.86 | 60.1 |
| Zm00001d048122_P003 | Maize | plasma membrane | 82.86 | 57.71 |
| Zm00001d037011_P001 | Maize | extracellular | 26.43 | 56.92 |
| HORVU4Hr1G069200.3 | Barley | plastid | 84.29 | 54.38 |
| AT3G03180.3 | Thale cress | plasma membrane | 71.43 | 52.08 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 59.29 | 51.88 |
| Solyc09g098500.2.1 | Tomato | extracellular, plasma membrane, vacuole | 46.43 | 50.0 |
Protein Annotations
| EnsemblPlants:Solyc02g069610.2.1 | EnsemblPlantsGene:Solyc02g069610.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF9 | PFAM:PF04178 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002768294 | UniProt:K4B7U3 | MapMan:35.1 | : |
Description
Vesicle transport protein GOT1 [Source:Projected from Arabidopsis thaliana (AT3G03180) UniProtKB/Swiss-Prot;Acc:Q6NMM1]
Coordinates
chr2:+:39453857..39457370
Molecular Weight (calculated)
15890.0 Da
IEP (calculated)
11.046
GRAVY (calculated)
0.794
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSFEMNDRK KIGLGLTGFG VFFSFLGIVF FFDKGLIAMG NILFFSGVAL TIGLKSSLQF FSKRSNFKGT ISFGVGFFFV IIGWPILGMI LEAYGFVVLF
101: SGFWPTLAVF LQKIPILGWI FQQPYIRSFF DRYRGKRVPV
101: SGFWPTLAVF LQKIPILGWI FQQPYIRSFF DRYRGKRVPV
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
Arabidopsis Description
At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.