Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G252600.1 | Wheat | plasma membrane | 100.0 | 100.0 |
| TraesCS4D01G252900.1 | Wheat | plasma membrane | 100.0 | 100.0 |
| EER95301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 98.57 | 98.57 |
| Zm00001d028040_P002 | Maize | plasma membrane | 97.86 | 97.86 |
| Os03t0209400-01 | Rice | plasma membrane | 97.14 | 97.14 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 90.0 | 90.0 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 85.71 | 85.71 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 84.29 | 84.29 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 80.71 | 83.7 |
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 83.57 | 83.57 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 83.57 | 83.57 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 82.14 | 82.14 |
| CDX80773 | Canola | plasma membrane | 81.43 | 81.43 |
| CDY11201 | Canola | plasma membrane | 80.71 | 80.71 |
| Bra005686.1-P | Field mustard | plasma membrane | 80.71 | 80.71 |
| AT3G49420.2 | Thale cress | plasma membrane | 80.0 | 80.0 |
| AT5G01430.1 | Thale cress | plasma membrane | 80.0 | 80.0 |
| Bra028903.1-P | Field mustard | plasma membrane | 80.0 | 80.0 |
| CDY04837 | Canola | plasma membrane | 80.0 | 80.0 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 78.57 | 78.57 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 78.57 | 78.57 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 78.57 | 78.57 |
| CDY21217 | Canola | plasma membrane | 76.43 | 76.43 |
| CDY49931 | Canola | plasma membrane | 72.86 | 75.56 |
| Zm00001d048122_P003 | Maize | plasma membrane | 96.43 | 67.16 |
| Bra021367.1-P | Field mustard | plasma membrane | 70.0 | 66.22 |
| HORVU4Hr1G069200.3 | Barley | plastid | 99.29 | 64.06 |
| KRG89688 | Soybean | plasma membrane | 80.0 | 58.03 |
| AT3G03180.3 | Thale cress | plasma membrane | 71.43 | 52.08 |
| TraesCS6A01G214500.1 | Wheat | plasma membrane | 47.86 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G051600.1 | EnsemblPlantsGene:TraesCS4A01G051600 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 |
| PANTHER:PTHR21493 | PANTHER:PTHR21493:SF9 | PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr4A:+:42273012..42274832
Molecular Weight (calculated)
15771.9 Da
IEP (calculated)
10.701
GRAVY (calculated)
0.822
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSFEMNDLK KIGLGLTGFG VFFSFLGIVF FFDKGLIAMG NILFLSGLGL TIGLKSTMQF FTKPKNYKGT ISFGAGFFLV LIGWPFFGML LEAYGFIVLF
101: SGFWPTLAVF LQRIPILGWI FQQPFVTSFL DRYRGKRVPV
101: SGFWPTLAVF LQRIPILGWI FQQPFVTSFL DRYRGKRVPV
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
Arabidopsis Description
At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.