Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 3
- vacuole 3
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055667 | Potato | extracellular, plasma membrane, vacuole | 57.86 | 70.77 |
| Solyc09g098500.2.1 | Tomato | extracellular, plasma membrane, vacuole | 57.23 | 70.0 |
| KRH46892 | Soybean | plasma membrane | 58.49 | 66.91 |
| TraesCS6D01G197200.1 | Wheat | plasma membrane | 51.57 | 61.19 |
| TraesCS6A01G214500.1 | Wheat | plasma membrane | 50.94 | 60.45 |
| EES05385 | Sorghum | plasma membrane | 50.94 | 60.0 |
| Os02t0602800-01 | Rice | plasma membrane | 50.94 | 60.0 |
| Zm00001d051009_P002 | Maize | plasma membrane | 50.94 | 60.0 |
| TraesCS6B01G244500.1 | Wheat | plasma membrane | 50.31 | 59.7 |
| KRH01801 | Soybean | endoplasmic reticulum, plasma membrane | 59.75 | 54.6 |
| Bra015452.1-P | Field mustard | extracellular | 55.97 | 52.05 |
| AT1G05785.6 | Thale cress | plasma membrane | 56.6 | 52.02 |
| HORVU6Hr1G054720.6 | Barley | plasma membrane, vacuole | 47.17 | 47.77 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 39.62 | 45.0 |
Protein Annotations
| EntrezGene:100256647 | wikigene:100256647 | MapMan:35.2 | ProteinID:CCB61580 | ProteinID:CCB61580.1 | UniProt:F6I3R2 |
| EMBL:FN596743 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | EntrezGene:LOC100256647 | wikigene:LOC100256647 | PFAM:PF04178 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF97 |
| TMHMM:TMhelix | UniParc:UPI000210AACA | ArrayExpress:VIT_05s0124g00090 | EnsemblPlantsGene:VIT_05s0124g00090 | EnsemblPlants:VIT_05s0124g00090.t01 | InterPro:Vesicle_transpt_Got1/SFT2 |
| RefSeq:XP_002271144 | RefSeq:XP_002271144.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:20493900..20499253
Molecular Weight (calculated)
17968.4 Da
IEP (calculated)
9.804
GRAVY (calculated)
0.938
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVFHFTRA ATKAFPAGEL SIDGDLSSVE PSLLIAMAYE MTEQKRVGLG LIGFGIFFTF LGVILFFDRG LLALGNIFWL TGVALLIGWR STWNLFSNRA
101: NYKGSISFLL GLFLIFVRWP IVGIIFEIYG YIVLFGGFWP SVKVFLYQIP VVGWILRFF
101: NYKGSISFLL GLFLIFVRWP IVGIIFEIYG YIVLFGGFWP SVKVFLYQIP VVGWILRFF
001: MVYEITEQKK VGLGLIGFGL SFTFLGVILY FDRGLLALGN LFWLIGVGLL LGWQSTWRVF TNVNNLRGTI CFVLGLFLIF VRWPIIGIIL EIYGVIVLFG
101: GFWSTVKAFL SQIPFVGWII QYPLMVSNPQ QHLPFPLMLL SYAFCTFRAS CQGLVLEQHP VLLPQFIQSL VVA
101: GFWSTVKAFL SQIPFVGWII QYPLMVSNPQ QHLPFPLMLL SYAFCTFRAS CQGLVLEQHP VLLPQFIQSL VVA
Arabidopsis Description
Got1/Sft2-like vescicle transport protein family [Source:TAIR;Acc:AT1G05785]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.