Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G214500.1 | Wheat | plasma membrane | 67.52 | 79.1 |
| TraesCS6D01G197200.1 | Wheat | plasma membrane | 67.52 | 79.1 |
| TraesCS6B01G244500.1 | Wheat | plasma membrane | 66.88 | 78.36 |
| EES05385 | Sorghum | plasma membrane | 65.61 | 76.3 |
| Zm00001d051009_P002 | Maize | plasma membrane | 65.61 | 76.3 |
| Os02t0602800-01 | Rice | plasma membrane | 64.97 | 75.56 |
| KRH46892 | Soybean | plasma membrane | 49.04 | 55.4 |
| PGSC0003DMT400055667 | Potato | extracellular, plasma membrane, vacuole | 43.31 | 52.31 |
| Solyc09g098500.2.1 | Tomato | extracellular, plasma membrane, vacuole | 42.68 | 51.54 |
| VIT_05s0124g00090.t01 | Wine grape | cytosol, plasma membrane, vacuole | 47.77 | 47.17 |
| Bra015452.1-P | Field mustard | extracellular | 50.32 | 46.2 |
| KRH01801 | Soybean | endoplasmic reticulum, plasma membrane | 50.32 | 45.4 |
| AT1G05785.6 | Thale cress | plasma membrane | 47.77 | 43.35 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 33.76 | 33.12 |
| HORVU4Hr1G069200.3 | Barley | plastid | 36.31 | 26.27 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G054720.6 | EnsemblPlantsGene:HORVU6Hr1G054720 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF97 | PFAM:PF04178 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000B46BB73 | UniProt:A0A287U839 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr6H:+:347221405..347228497
Molecular Weight (calculated)
17673.8 Da
IEP (calculated)
10.004
GRAVY (calculated)
0.775
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYEISEIKK IGIGLVGFGI LFSFLGVILF FDRGLLALGN IFFLTGVGLL LGWQSMWQLF TKKANIKGSV PFFLGLFLLF VRWPVAGIIL ELYGTFVLFR
101: SSPTSNHFSN TPFISWLILT FAFIRQWLWG SYSSLPISDS NNWMDSAIPL SAVWSQA
101: SSPTSNHFSN TPFISWLILT FAFIRQWLWG SYSSLPISDS NNWMDSAIPL SAVWSQA
001: MVYEITEQKK VGLGLIGFGL SFTFLGVILY FDRGLLALGN LFWLIGVGLL LGWQSTWRVF TNVNNLRGTI CFVLGLFLIF VRWPIIGIIL EIYGVIVLFG
101: GFWSTVKAFL SQIPFVGWII QYPLMVLEQL VRGAR
101: GFWSTVKAFL SQIPFVGWII QYPLMVLEQL VRGAR
Arabidopsis Description
Got1/Sft2-like vescicle transport protein family [Source:TAIR;Acc:AT1G05785]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.