Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- extracellular 3
- plasma membrane 4
- vacuole 4
- endoplasmic reticulum 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g098500.2.1 | Tomato | extracellular, plasma membrane, vacuole | 99.23 | 99.23 |
| KRH46892 | Soybean | plasma membrane | 64.62 | 60.43 |
| TraesCS6B01G244500.1 | Wheat | plasma membrane | 60.77 | 58.96 |
| TraesCS6D01G197200.1 | Wheat | plasma membrane | 60.77 | 58.96 |
| Zm00001d051009_P002 | Maize | plasma membrane | 60.77 | 58.52 |
| VIT_05s0124g00090.t01 | Wine grape | cytosol, plasma membrane, vacuole | 70.77 | 57.86 |
| EES05385 | Sorghum | plasma membrane | 60.0 | 57.78 |
| Os02t0602800-01 | Rice | plasma membrane | 60.0 | 57.78 |
| TraesCS6A01G214500.1 | Wheat | plasma membrane | 59.23 | 57.46 |
| KRH01801 | Soybean | endoplasmic reticulum, plasma membrane | 66.15 | 49.43 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 50.0 | 48.15 |
| Bra015452.1-P | Field mustard | extracellular | 63.08 | 47.95 |
| AT1G05785.6 | Thale cress | plasma membrane | 62.31 | 46.82 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 50.0 | 46.43 |
| HORVU6Hr1G054720.6 | Barley | plasma membrane, vacuole | 52.31 | 43.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055667 | EnsemblPlantsGene:PGSC0003DMG401021616 | EntrezGene:102597829 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF97 |
| PFAM:PF04178 | PGSC:PGSC0003DMG401021616 | RefSeq:XP_006364670.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294BA0D |
| UniProt:M1BYB1 | MapMan:35.2 | : | : | : | : |
Description
Vesicle transport protein GOT1B [Source:PGSC_GENE;Acc:PGSC0003DMG401021616]
Coordinates
chr9:+:61309118..61314399
Molecular Weight (calculated)
14778.0 Da
IEP (calculated)
9.591
GRAVY (calculated)
1.222
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYELDEQKK VGLGLIGFGI FFTFLAIMLF FDRGLLALAN ILLLAGVALL LGLRSTLQLF KVNYKGTISF MLGLFLIFVR WPVVGIIVEI YGCIILFGCF
101: WPSIKVFLFQ IPVFGWILQY PALLLDRFRS
101: WPSIKVFLFQ IPVFGWILQY PALLLDRFRS
001: MVYEITEQKK VGLGLIGFGL SFTFLGVILY FDRGLLALGN LFWLIGVGLL LGWQSTWRVF TNVNNLRGTI CFVLGLFLIF VRWPIIGIIL EIYGVIVLFG
101: GFWSTVKAFL SQIPFVGWII QYPLMVLEQL VRGAR
101: GFWSTVKAFL SQIPFVGWII QYPLMVLEQL VRGAR
Arabidopsis Description
Got1/Sft2-like vescicle transport protein family [Source:TAIR;Acc:AT1G05785]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.