Factsheet for Zm00001d002028_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d024543_P001
Zm00001d038803_P001
Zm00001d045617_P001
Zm00001d049540_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	Zm00001d045617_P001	AT1G01010.1	21798944
AT3G43520.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT3G43520.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT3G43520.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT3G43520.1	Zm00001d024543_P001	AT3G49530.1	21798944
AT3G43520.1	Zm00001d049540_P002	AT3G49530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12994	Sorghum	plastid	82.7	73.56
TraesCS2A01G506400.1	Wheat	plastid	69.73	62.62
TraesCS2D01G507100.1	Wheat	golgi	69.19	62.14
TraesCS2B01G534700.1	Wheat	golgi	68.65	61.65
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	32.97	60.4
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	34.59	59.26
AT2G26240.1	Thale cress	cytosol, extracellular	25.95	44.44
Os04t0653100-01	Rice	plasma membrane, plastid	71.89	43.32
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	38.38	41.52
KRH02516	Soybean	plastid	45.95	38.29
KRH19425	Soybean	plastid	47.03	38.16
Zm00001d026478_P001	Maize	extracellular, plastid	31.89	37.82
HORVU2Hr1G112380.1	Barley	peroxisome	42.16	35.94
VIT_07s0130g00480.t01	Wine grape	plastid	47.03	35.37
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	24.32	33.33
CDY30952	Canola	plastid	38.38	32.42
Bra019447.1-P	Field mustard	plastid	38.38	32.42
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	24.32	30.82
Bra007767.1-P	Field mustard	cytosol	21.62	30.53
Solyc11g073240.1.1	Tomato	plastid	40.0	29.72
CDY44845	Canola	plastid	37.3	29.49
PGSC0003DMT400040170	Potato	plastid	38.92	29.27
PGSC0003DMT400040171	Potato	plastid	38.92	29.27
AT3G43520.1	Thale cress	plastid	36.22	27.92

Protein Annotations

EnsemblPlants:Zm00001d002028_P001	EnsemblPlants:Zm00001d002028_T001	EnsemblPlantsGene:Zm00001d002028	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	ProteinID:ONM12816.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0008450B9A	UniProt:A0A1D6DVR9	MapMan:24.2.22	:

Description

Protein FATTY ACID EXPORT 2 chloroplastic

Coordinates

chr2:+:4663113..4666196

Molecular Weight (calculated)

18374.5 Da

IEP (calculated)

10.780

GRAVY (calculated)

0.095

Length

185 amino acids

Sequence
(BLAST)

001: MALALATTPL AHLALAPPSI FGSQSSLLLL PRRASPAPVS LSHRRIIAAV ATKEPELGGG GSGAGDGAGG SGGGSDPRGG GQEGDGEEEK MGQGLSMSQK
101: LTLAYAALVG AGGVMGYMKS GSQKSLAAGG ISALVLYVVH TQLPVRPVLA SSIGLGISAA LLSVMGSRFK KSGKKRQEKQ GTKVI

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.