Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G507100.1 | Wheat | golgi | 97.57 | 97.57 |
| TraesCS2A01G506400.1 | Wheat | plastid | 97.57 | 97.57 |
| HORVU2Hr1G112370.1 | Barley | golgi, mitochondrion, plastid | 44.17 | 90.1 |
| GSMUA_Achr5P24090_001 | Banana | extracellular, golgi, plasma membrane | 40.78 | 77.78 |
| EES12994 | Sorghum | plastid | 75.24 | 74.52 |
| Zm00001d002028_P001 | Maize | plastid | 61.65 | 68.65 |
| AT2G26240.1 | Thale cress | cytosol, extracellular | 29.61 | 56.48 |
| PGSC0003DMT400040174 | Potato | cytosol, peroxisome, plastid | 43.69 | 52.63 |
| Os04t0653100-01 | Rice | plasma membrane, plastid | 76.21 | 51.14 |
| HORVU2Hr1G112380.1 | Barley | peroxisome | 52.43 | 49.77 |
| KRH02516 | Soybean | plastid | 52.91 | 49.1 |
| KRH19425 | Soybean | plastid | 53.88 | 48.68 |
| VIT_07s0130g00480.t01 | Wine grape | plastid | 52.91 | 44.31 |
| Zm00001d026478_P001 | Maize | extracellular, plastid | 32.04 | 42.31 |
| CDY11499 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 27.67 | 42.22 |
| Bra007767.1-P | Field mustard | cytosol | 26.7 | 41.98 |
| CDY30952 | Canola | plastid | 44.17 | 41.55 |
| Bra019447.1-P | Field mustard | plastid | 44.17 | 41.55 |
| CDX76725 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 27.67 | 39.04 |
| PGSC0003DMT400040170 | Potato | plastid | 44.17 | 36.99 |
| PGSC0003DMT400040171 | Potato | plastid | 44.17 | 36.99 |
| CDY44845 | Canola | plastid | 41.75 | 36.75 |
| Solyc11g073240.1.1 | Tomato | plastid | 43.2 | 35.74 |
| AT3G43520.1 | Thale cress | plastid | 40.78 | 35.0 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G534700.1 | EnsemblPlantsGene:TraesCS2B01G534700 | Gene3D:1.20.58.1140 | GO:GO:0005575 | GO:GO:0016020 | InterPro:TMEM14 |
| PANTHER:PTHR12668 | PANTHER:PTHR12668:SF5 | PFAM:PF03647 | SEG:seg | TMHMM:TMhelix | MapMan:24.2.22 |
Description
No Description!
Coordinates
chr2B:+:730996109..730998567
Molecular Weight (calculated)
20090.6 Da
IEP (calculated)
10.341
GRAVY (calculated)
0.411
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLATTPLL APLALSPAPI SASQSSLLFL RAPAPALLSL RSASPGARLL AAVASKEPEL GGGGSEGGDG AGSGRGGGGG SDPQGGGDEG EEGKMGDGLS
101: MSQKLTLAYA ALVGAGGVMG YMKSGSQKSL AAGGISALVL FFVHTQLPVR PVFASAIGLG ISAALLSVMG SRFKKSGKIF PAGVVSLLSL VMVGGYAHGI
201: MRSSHA
101: MSQKLTLAYA ALVGAGGVMG YMKSGSQKSL AAGGISALVL FFVHTQLPVR PVFASAIGLG ISAALLSVMG SRFKKSGKIF PAGVVSLLSL VMVGGYAHGI
201: MRSSHA
001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
Arabidopsis Description
FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.