Factsheet for Bra019447.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra017980.1-P
Bra019599.1-P
Bra020182.1-P
Bra027174.1-P
Bra033296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	Bra033296.1-P	AT1G01010.1	21798944
AT3G43520.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G43520.1	Bra017980.1-P	AT3G49530.1	21798944
AT3G43520.1	Bra019599.1-P	AT3G49530.1	21798944
AT3G43520.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G43520.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G43520.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30952	Canola	plastid	100.0	100.0
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	30.59	62.04
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	26.94	58.42
AT3G43520.1	Thale cress	plastid	63.93	58.33
GSMUA_Achr3P05290_001	Banana	extracellular	28.31	55.86
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	41.1	52.63
TraesCS2D01G507100.1	Wheat	golgi	42.47	45.15
TraesCS2A01G506400.1	Wheat	plastid	42.47	45.15
TraesCS2B01G534700.1	Wheat	golgi	41.55	44.17
EES12994	Sorghum	plastid	41.55	43.75
Bra007767.1-P	Field mustard	cytosol	25.57	42.75
PGSC0003DMT400040171	Potato	plastid	47.95	42.68
PGSC0003DMT400040170	Potato	plastid	47.95	42.68
KRH19425	Soybean	plastid	42.01	40.35
KRH02516	Soybean	plastid	40.64	40.09
Solyc11g073240.1.1	Tomato	plastid	44.29	38.96
Zm00001d002028_P001	Maize	plastid	32.42	38.38
VIT_07s0130g00480.t01	Wine grape	plastid	42.47	37.8
HORVU2Hr1G112380.1	Barley	peroxisome	32.88	33.18
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	13.24	32.95
Zm00001d026478_P001	Maize	extracellular, plastid	22.37	31.41
GSMUA_AchrUn_...	Banana	mitochondrion	12.79	29.79
Os04t0653100-01	Rice	plasma membrane, plastid	40.64	28.99

Protein Annotations

EnsemblPlants:Bra019447.1	EnsemblPlants:Bra019447.1-P	EnsemblPlantsGene:Bra019447	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	SEG:seg
TMHMM:TMhelix	UniParc:UPI000253F162	UniProt:M4DSF4	MapMan:24.2.22	:	:

Description

AT3G43520 (E=5e-039) | unknown protein

Coordinates

chrA06:-:13595766..13596740

Molecular Weight (calculated)

22361.3 Da

IEP (calculated)

9.472

GRAVY (calculated)

0.287

Length

219 amino acids

Sequence
(BLAST)

001: MAELLLSSSA QSSLRPRGIL SFNTPSASPI RSLAFTSSKG FHPLAFKSAH QRLITSITVN CVDSGAKAVE VEPVIGGGGG GGIGGDKFGG GGGGGDDNDE
101: GEAGGEEETP LPLSMSQKLT LGYAFLVGVG GLMGYLKSGS QKSLLAGGLS AAVLLFVFRE LPTKPVLAST IGVVMAGALT WVMGTRYMGS KKIFPAGVVS
201: FMSFIMTGGY IHGIMRSLH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.