Factsheet for TraesCS2D01G507100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
peroxisome 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS4A01G499900.1
TraesCS7A01G000300.1
TraesCS7A01G299600.3
TraesCS7B01G187600.1
TraesCS7D01G000200.1
TraesCS7D01G295100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	TraesCS4A01G499900.1	AT1G01010.1	21798944
AT3G43520.1	TraesCS7A01G000300.1	AT1G01010.1	21798944
AT3G43520.1	TraesCS7D01G000200.1	AT1G01010.1	21798944
AT3G43520.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT3G43520.1	TraesCS7A01G299600.3	AT3G49530.1	21798944
AT3G43520.1	TraesCS7B01G187600.1	AT3G49530.1	21798944
AT3G43520.1	TraesCS7D01G295100.1	AT3G49530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G506400.1	Wheat	plastid	99.03	99.03
TraesCS2B01G534700.1	Wheat	golgi	97.57	97.57
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	44.17	90.1
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	40.78	77.78
EES12994	Sorghum	plastid	76.21	75.48
Zm00001d002028_P001	Maize	plastid	62.14	69.19
AT2G26240.1	Thale cress	cytosol, extracellular	29.13	55.56
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	43.69	52.63
Os04t0653100-01	Rice	plasma membrane, plastid	77.18	51.79
HORVU2Hr1G112380.1	Barley	peroxisome	52.43	49.77
KRH02516	Soybean	plastid	51.94	48.2
KRH19425	Soybean	plastid	52.91	47.81
VIT_07s0130g00480.t01	Wine grape	plastid	54.37	45.53
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.16	42.96
CDY30952	Canola	plastid	45.15	42.47
Bra019447.1-P	Field mustard	plastid	45.15	42.47
Bra007767.1-P	Field mustard	cytosol	26.7	41.98
Zm00001d026478_P001	Maize	extracellular, plastid	31.55	41.67
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.16	39.73
PGSC0003DMT400040171	Potato	plastid	45.15	37.8
PGSC0003DMT400040170	Potato	plastid	45.15	37.8
CDY44845	Canola	plastid	42.72	37.61
Solyc11g073240.1.1	Tomato	plastid	43.69	36.14
AT3G43520.1	Thale cress	plastid	41.75	35.83

Protein Annotations

EnsemblPlants:TraesCS2D01G507100.1	EnsemblPlantsGene:TraesCS2D01G507100	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020	InterPro:TMEM14
PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
MapMan:24.2.22	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:600972678..600975495

Molecular Weight (calculated)

19991.5 Da

IEP (calculated)

10.139

GRAVY (calculated)

0.431

Length

206 amino acids

Sequence
(BLAST)

001: MALLATTPLL APLALSPAPI SASQSSLLFL RAPAPALLSL RSASPGARLL AAVASKEPEL GGGGSGGGDG AGSGGGGGGG SDPQGGGDEG EDEKMGEGLS
101: MSQKLTLAYA ALVGAGGVMG YMKSGSQKSL AAGGISALVL FFVHTQLPVR PVFASAIGLG ISAALLSVMG SRFKKSGKIF PAGVVSLLSL VMVGGYAHGI
201: MRSSHA

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.