Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
plasma membrane: 28056797 |
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os05t0520100-00 | |
| Os06t0101800-01 | |
| Os08t0157900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43520.1 | Os06t0101800-01 | AT1G01010.1 | 21798944 |
| AT3G43520.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT3G43520.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
| AT3G43520.1 | Os08t0157900-01 | AT3G49530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G112370.1 | Barley | golgi, mitochondrion, plastid | 27.36 | 83.17 |
| GSMUA_Achr5P24090_001 | Banana | extracellular, golgi, plasma membrane | 28.34 | 80.56 |
| TraesCS2A01G506400.1 | Wheat | plastid | 52.12 | 77.67 |
| TraesCS2D01G507100.1 | Wheat | golgi | 51.79 | 77.18 |
| TraesCS2B01G534700.1 | Wheat | golgi | 51.14 | 76.21 |
| EES12994 | Sorghum | plastid | 51.47 | 75.96 |
| Zm00001d002028_P001 | Maize | plastid | 43.32 | 71.89 |
| AT2G26240.1 | Thale cress | cytosol, extracellular | 20.2 | 57.41 |
| PGSC0003DMT400040174 | Potato | cytosol, peroxisome, plastid | 28.34 | 50.88 |
| KRH02516 | Soybean | plastid | 35.18 | 48.65 |
| KRH19425 | Soybean | plastid | 34.85 | 46.93 |
| VIT_07s0130g00480.t01 | Wine grape | plastid | 37.13 | 46.34 |
| HORVU2Hr1G112380.1 | Barley | peroxisome | 32.57 | 46.08 |
| CDY11499 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 19.54 | 44.44 |
| Bra007767.1-P | Field mustard | cytosol | 18.57 | 43.51 |
| Zm00001d026478_P001 | Maize | extracellular, plastid | 21.5 | 42.31 |
| CDX76725 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 19.54 | 41.1 |
| CDY30952 | Canola | plastid | 28.99 | 40.64 |
| Bra019447.1-P | Field mustard | plastid | 28.99 | 40.64 |
| CDY44845 | Canola | plastid | 29.32 | 38.46 |
| PGSC0003DMT400040171 | Potato | plastid | 29.97 | 37.4 |
| PGSC0003DMT400040170 | Potato | plastid | 29.97 | 37.4 |
| AT3G43520.1 | Thale cress | plastid | 28.99 | 37.08 |
| Solyc11g073240.1.1 | Tomato | plastid | 29.32 | 36.14 |
Protein Annotations
| EnsemblPlants:Os04t0653100-01 | EnsemblPlantsGene:Os04g0653100 | Gene3D:1.20.58.1140 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM14 | ncoils:Coil | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF5 | PFAM:PF03647 | ProteinID:BAS91386.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000393BA6F | UniProt:A0A0P0WFP9 | MapMan:24.2.22 | : |
Description
Uncharacterised protein family UPF0136, Transmembrane domain containing protein. (Os04t0653100-01)
Coordinates
chr4:-:33311330..33313304
Molecular Weight (calculated)
32058.0 Da
IEP (calculated)
10.964
GRAVY (calculated)
-0.375
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMMQGVHMQ SCVPRAPQET NRPSRCNPTQ KSSNRKGKKK EFQKEKEKKE KEIKEKKRKE KKRKRKPGAH PQSHTTNLPV KNPHHITSIS STRSWNSSSS
101: MAIATTTLPL APLALAPPSS PISQCSLLLL RPRAPAALSL RPSARLLVAV AASEPELGGS GGGGAGDGSG SGGGGDSEKP RGGGGDEEGE GEEEKMGQGL
201: SMSQKITLAY AALVGAGGAM GYMKSGSQKS LAAGGISALV LYFVHTQLPV RPVFASSIGL GISAALLSVM GSRFKKSGKI FPAGVVSLVS LVMVGGYIHG
301: ILRSTHA
101: MAIATTTLPL APLALAPPSS PISQCSLLLL RPRAPAALSL RPSARLLVAV AASEPELGGS GGGGAGDGSG SGGGGDSEKP RGGGGDEEGE GEEEKMGQGL
201: SMSQKITLAY AALVGAGGAM GYMKSGSQKS LAAGGISALV LYFVHTQLPV RPVFASSIGL GISAALLSVM GSRFKKSGKI FPAGVVSLVS LVMVGGYIHG
301: ILRSTHA
001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
Arabidopsis Description
FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.