Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P | |
| Bra026434.1-P | |
| Bra027174.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10030.1 | Bra027174.1-P | AT3G16310.1 | 21798944 |
| AT1G10030.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT1G10030.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
| AT1G10030.1 | Bra026434.1-P | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31053 | Canola | extracellular | 99.22 | 99.22 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 93.02 | 93.02 |
| KRH62124 | Soybean | extracellular, golgi | 76.74 | 76.74 |
| KRH52827 | Soybean | extracellular | 76.74 | 76.74 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 76.74 | 75.57 |
| Os12t0633200-01 | Rice | extracellular, golgi | 80.62 | 74.82 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 94.57 | 74.39 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 74.42 | 73.85 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 78.29 | 71.13 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 70.54 | 70.54 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 77.52 | 70.42 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 70.54 | 70.0 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 69.77 | 69.77 |
| OQU79719 | Sorghum | extracellular, golgi | 76.74 | 69.72 |
| TraesCS2B01G376400.1 | Wheat | golgi | 75.19 | 68.31 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 75.19 | 68.31 |
| EES19099 | Sorghum | golgi, plasma membrane | 75.19 | 67.36 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 76.74 | 66.0 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 55.04 | 65.74 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 68.22 | 64.71 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 68.99 | 63.12 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 20.16 | 59.09 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 75.19 | 58.79 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 55.04 | 50.71 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 55.04 | 50.71 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 53.49 | 50.0 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 52.71 | 48.57 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 51.94 | 45.58 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 50.39 | 44.52 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 49.61 | 43.54 |
| Zm00001d040493_P001 | Maize | plastid | 47.29 | 33.7 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 42.64 | 33.54 |
Protein Annotations
| EnsemblPlants:Bra018466.1 | EnsemblPlants:Bra018466.1-P | EnsemblPlantsGene:Bra018466 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002548020 |
| UniProt:M4DPM5 | MapMan:35.1 | : | : | : | : |
Description
AT1G10030 (E=7e-059) ERG28 | ERG28 (Arabidopsis homolog of yeast ergosterol28)
Coordinates
chrA05:-:8333978..8335881
Molecular Weight (calculated)
14857.3 Da
IEP (calculated)
8.846
GRAVY (calculated)
0.659
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNPENKPL YLATFLSFIY ALGHFLTEYL FYHTMTIANL
101: STVAFFAGTS IVWMLWEWRS LDKPPSKLA
101: STVAFFAGTS IVWMLWEWRS LDKPPSKLA
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.