Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- extracellular 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 66.67 | 87.04 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 26.95 | 86.36 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 76.6 | 79.41 |
| Os12t0633200-01 | Rice | extracellular, golgi | 73.05 | 74.1 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 73.05 | 72.54 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 72.34 | 71.83 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 64.54 | 70.54 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 63.83 | 69.77 |
| TraesCS2B01G376400.1 | Wheat | golgi | 69.5 | 69.01 |
| Bra018466.1-P | Field mustard | extracellular | 63.12 | 68.99 |
| CDY31053 | Canola | extracellular | 63.12 | 68.99 |
| CDY63742 | Canola | extracellular, golgi | 63.12 | 68.99 |
| CDY20664 | Canola | extracellular | 62.41 | 67.69 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 67.38 | 66.9 |
| OQU79719 | Sorghum | extracellular, golgi | 67.38 | 66.9 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 61.7 | 66.41 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 60.99 | 66.15 |
| EES19099 | Sorghum | golgi, plasma membrane | 67.38 | 65.97 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 60.28 | 65.38 |
| KRH62124 | Soybean | extracellular, golgi | 59.57 | 65.12 |
| KRH52827 | Soybean | extracellular | 58.16 | 63.57 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 67.38 | 63.33 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 57.45 | 62.79 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 56.03 | 61.24 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 68.79 | 58.79 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 63.12 | 54.27 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 47.52 | 47.86 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G068400.2 | EnsemblPlantsGene:HORVU6Hr1G068400 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Erg28 |
| PANTHER:PTHR15451 | PFAM:PF03694 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B46B668 | UniProt:A0A287UJ61 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:473998443..473999662
Molecular Weight (calculated)
15996.7 Da
IEP (calculated)
8.060
GRAVY (calculated)
0.718
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: PPSPLPSYPV GSLPWLMLVD SLRLTSVWFG FFNIWALRVA VFSQTDMTEI HGRTNGVWTL LTCTLCFLCA FNLENKPLYI ATFLSFIYAL GHFLTEYLIY
101: HTIAATNLST VGFFAGFTII FQIIFKNMYF SSRPSLIVSL S
101: HTIAATNLST VGFFAGFTII FQIIFKNMYF SSRPSLIVSL S
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.