Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- golgi 3
- endoplasmic reticulum 3
- extracellular 3
- vacuole 2
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10030.1 | EES02290 | AT3G16310.1 | 21798944 |
| AT1G10030.1 | EES19830 | AT3G16310.1 | 21798944 |
| AT1G10030.1 | EER96942 | AT4G26455.1 | 21798944 |
| AT1G10030.1 | EES14314 | AT4G26455.1 | 21798944 |
| AT1G10030.1 | OQU81760 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 99.3 | 94.0 |
| EES19099 | Sorghum | golgi, plasma membrane | 94.37 | 93.06 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 88.73 | 88.73 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 88.03 | 88.03 |
| TraesCS2B01G376400.1 | Wheat | golgi | 84.51 | 84.51 |
| Os12t0633200-01 | Rice | extracellular, golgi | 82.39 | 84.17 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 71.83 | 78.46 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 71.13 | 78.29 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 71.13 | 77.69 |
| KRH62124 | Soybean | extracellular, golgi | 70.42 | 77.52 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 71.13 | 77.1 |
| Bra018466.1-P | Field mustard | extracellular | 69.72 | 76.74 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 69.72 | 76.74 |
| KRH52827 | Soybean | extracellular | 69.01 | 75.97 |
| CDY63742 | Canola | extracellular, golgi | 69.01 | 75.97 |
| CDY31053 | Canola | extracellular | 69.01 | 75.97 |
| CDY20664 | Canola | extracellular | 68.31 | 74.62 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 67.61 | 74.42 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 66.2 | 72.87 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 52.82 | 69.44 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 66.9 | 67.38 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 78.17 | 67.27 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 64.08 | 66.91 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 69.01 | 59.76 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 17.61 | 56.82 |
Protein Annotations
| EnsemblPlants:OQU79719 | EnsemblPlantsGene:SORBI_3008G186600 | EntrezGene:8071528 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:OQU79719 | ProteinID:OQU79719.1 | RefSeq:XP_002443647.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A88B2C | UniProt:A0A1Z5R814 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr8:-:62141331..62143802
Molecular Weight (calculated)
15927.5 Da
IEP (calculated)
8.874
GRAVY (calculated)
0.485
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEGKRKGV PALGWWLMLV GSLRLASVWF GFFDIWALRV AVFSQTEMTD VHGRTFGVWT LLTCTLCFLC ALNLENRPLY LATFLSFIYA LGHFLTEYLI
101: YHTMAAANLS TVGFFAGTSI IWMLLQWNSH GNPRGSHAGK QS
101: YHTMAAANLS TVGFFAGTSI IWMLLQWNSH GNPRGSHAGK QS
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.