Factsheet for Os12t0633200-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os04t0471300-01
Os05t0520100-00
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10030.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G10030.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G10030.1	Os04t0471300-01	AT4G26455.1	21798944
AT1G10030.1	Os08t0497900-01	AT4G26455.1	21798944
AT1G10030.1	Os09t0481300-01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G357200.1	Wheat	extracellular, golgi	87.77	85.92
TraesCS2D01G356000.1	Wheat	extracellular, golgi, plasma membrane	87.05	85.21
AT1G10030.1	Thale cress	extracellular, golgi	76.98	82.95
TraesCS2B01G376400.1	Wheat	golgi	84.17	82.39
OQU79719	Sorghum	extracellular, golgi	84.17	82.39
CDY57928	Canola	extracellular, golgi, vacuole	76.26	82.17
CDY63742	Canola	extracellular, golgi	75.54	81.4
Zm00001d037522_P001	Maize	extracellular, golgi	82.73	80.99
Bra018466.1-P	Field mustard	extracellular	74.82	80.62
CDY31053	Canola	extracellular	74.82	80.62
EES19099	Sorghum	golgi, plasma membrane	83.45	80.56
VIT_18s0001g08330.t01	Wine grape	extracellular	74.1	78.63
KRH52827	Soybean	extracellular	72.66	78.29
KRH62124	Soybean	extracellular, golgi	72.66	78.29
Zm00001d031200_P002	Maize	golgi, plasma membrane	84.17	78.0
PGSC0003DMT400012718	Potato	extracellular, golgi	71.94	77.52
GSMUA_Achr6P30120_001	Banana	extracellular	71.94	76.92
Solyc04g077150.2.1	Tomato	extracellular, golgi	70.5	75.97
CDY20664	Canola	extracellular	70.5	75.38
GSMUA_Achr7P08060_001	Banana	extracellular, golgi, plasma membrane	69.78	74.62
HORVU1Hr1G028210.2	Barley	endoplasmic reticulum, extracellular, mitochondrion, plastid	57.55	74.07
HORVU6Hr1G068400.2	Barley	endoplasmic reticulum, extracellular	74.1	73.05
HORVU4Hr1G011970.1	Barley	endoplasmic reticulum, extracellular, mitochondrion, plastid	70.5	72.06
Bra019965.1-P	Field mustard	golgi, plasma membrane	75.54	64.02
HORVU2Hr1G086900.2	Barley	golgi, plasma membrane	75.54	63.64
HORVU6Hr1G056080.4	Barley	endoplasmic reticulum, vacuole	19.42	61.36

Protein Annotations

MapMan:35.1	EntrezGene:4352876	ProteinID:ABA99943.2	EMBL:AK062615	ProteinID:BAF30369.1	ProteinID:BAT18230.1
ProteinID:EEE53660.1	InterPro:Erg28	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006629
GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0030674	EnsemblPlantsGene:Os12g0633200	EnsemblPlants:Os12t0633200-01	PFAM:PF03694	PANTHER:PTHR15451
UniProt:Q2QLQ4	TMHMM:TMhelix	UniParc:UPI0000D89EB8	RefSeq:XP_015618276.1	SEG:seg	:

Description

Erg28-like family protein. (Os12t0633200-01)

Coordinates

chr12:-:27132446..27134705

Molecular Weight (calculated)

15716.4 Da

IEP (calculated)

9.288

GRAVY (calculated)

0.583

Length

139 amino acids

Sequence
(BLAST)

001: MAGGGRMPLL GWWLMLVGSL RLASVWFGFF NIWALRVAVF SQTDMTEIHG RTFGVWTLLT CTLCFLCAFN LENRPLYLAT FLSFIYALGH FLTEYLIYHT
101: MAVANLSTVG FFAGTSIVWM LLQWNSHGKS RGSQSVKQS

Best Arabidopsis Sequence Match ( AT1G10030.1 )
(BLAST)

001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS

Arabidopsis Description

ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.