Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 98.45 | 98.45 |
| KRH52827 | Soybean | extracellular | 81.4 | 81.4 |
| KRH62124 | Soybean | extracellular, golgi | 79.84 | 79.84 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 79.84 | 78.63 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 76.74 | 76.15 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 74.42 | 74.42 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 74.42 | 73.85 |
| Os12t0633200-01 | Rice | extracellular, golgi | 77.52 | 71.94 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 70.54 | 70.54 |
| Bra018466.1-P | Field mustard | extracellular | 69.77 | 69.77 |
| CDY63742 | Canola | extracellular, golgi | 69.77 | 69.77 |
| CDY31053 | Canola | extracellular | 69.77 | 69.77 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 75.19 | 68.31 |
| OQU79719 | Sorghum | extracellular, golgi | 74.42 | 67.61 |
| CDY20664 | Canola | extracellular | 67.44 | 66.92 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 73.64 | 66.9 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 73.64 | 66.9 |
| EES19099 | Sorghum | golgi, plasma membrane | 74.42 | 66.67 |
| TraesCS2B01G376400.1 | Wheat | golgi | 71.32 | 64.79 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 74.42 | 64.0 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 50.39 | 60.19 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 62.02 | 58.82 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 62.79 | 57.45 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 69.77 | 54.88 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 68.22 | 53.33 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 17.83 | 52.27 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 51.94 | 47.86 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 51.16 | 47.14 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 48.84 | 45.65 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 51.16 | 44.9 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 47.29 | 43.57 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 48.06 | 42.47 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 48.06 | 42.18 |
| Zm00001d040493_P001 | Maize | plastid | 44.19 | 31.49 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 39.53 | 31.1 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012718 | EnsemblPlantsGene:PGSC0003DMG400004956 | EntrezGene:102599846 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | PGSC:PGSC0003DMG400004956 | RefSeq:XP_006356807.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000295585F | UniProt:M1A1N3 | MapMan:35.1 | : | : |
Description
Erg28 [Source:PGSC_GENE;Acc:PGSC0003DMG400004956]
Coordinates
chr4:+:66147214..66150787
Molecular Weight (calculated)
14843.5 Da
IEP (calculated)
8.868
GRAVY (calculated)
0.733
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLGWWLML VGTLRLASVW FGFVDIWALR VAVFSKTTMT EVHGRTFGVW TLLTCTLCYL CAFNLHDRPL YLATILSFVY AFGHFLTEFL IYQTMAIKNL
101: VTVGIFAGTS IVWMLLQWNA HQQVKTKSP
101: VTVGIFAGTS IVWMLLQWNA HQQVKTKSP
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.