Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- golgi 2
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 97.26 | 96.6 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 76.71 | 76.19 |
| Zm00001d040493_P001 | Maize | plastid | 84.25 | 67.96 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 46.58 | 52.71 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 49.32 | 52.17 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 45.89 | 51.94 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 46.58 | 51.91 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 45.89 | 51.54 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 49.32 | 51.43 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 50.0 | 51.41 |
| CDY63742 | Canola | extracellular, golgi | 45.21 | 51.16 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 48.63 | 50.71 |
| Bra018466.1-P | Field mustard | extracellular | 44.52 | 50.39 |
| KRH52827 | Soybean | extracellular | 44.52 | 50.39 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 47.95 | 50.0 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 44.52 | 50.0 |
| KRH62124 | Soybean | extracellular, golgi | 43.84 | 49.61 |
| CDY31053 | Canola | extracellular | 43.84 | 49.61 |
| CDY20664 | Canola | extracellular | 43.15 | 48.46 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 42.47 | 48.06 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 42.47 | 48.06 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 49.32 | 48.0 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 52.74 | 46.95 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 46.58 | 41.46 |
Protein Annotations
| EnsemblPlants:Zm00001d040481_P001 | EnsemblPlants:Zm00001d040481_T001 | EnsemblPlantsGene:Zm00001d040481 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:ONM31440.1 | TMHMM:TMhelix | UniParc:UPI000843CF79 |
| UniProt:A0A1D6MR14 | MapMan:35.1 | : | : | : | : |
Description
Ergosterol biosynthetic protein 28
Coordinates
chr3:-:46133858..46134960
Molecular Weight (calculated)
15913.6 Da
IEP (calculated)
9.677
GRAVY (calculated)
0.508
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPLKLKKR GMPALGRWLM AVGSLRSAFT WSCFFGSASL CSATYSEIQV TGVHGRTVAV WTLLSCTLCF LCAFNLSSKP LYAATFLSIV YAIGHLSVEC
101: VVYHTISAAS LAPFTFIAVT TMVWMLLQWN SDGHNPRPGR STSKQP
101: VVYHTISAAS LAPFTFIAVT TMVWMLLQWN SDGHNPRPGR STSKQP
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.