Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- golgi 2
- extracellular 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 67.96 | 84.25 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 67.96 | 83.67 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 55.25 | 68.03 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 39.23 | 51.45 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 39.23 | 50.71 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 38.12 | 49.29 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 37.57 | 48.57 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 34.81 | 48.46 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 34.25 | 48.06 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 34.25 | 47.33 |
| Bra018466.1-P | Field mustard | extracellular | 33.7 | 47.29 |
| CDY63742 | Canola | extracellular, golgi | 33.7 | 47.29 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 33.7 | 47.29 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 37.02 | 47.18 |
| CDY20664 | Canola | extracellular | 33.7 | 46.92 |
| CDY31053 | Canola | extracellular | 33.15 | 46.51 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 33.15 | 46.15 |
| KRH62124 | Soybean | extracellular, golgi | 32.6 | 45.74 |
| KRH52827 | Soybean | extracellular | 32.6 | 45.74 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 40.88 | 45.12 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 31.49 | 44.19 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 31.49 | 44.19 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 36.46 | 44.0 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 34.25 | 37.8 |
Protein Annotations
| EnsemblPlants:Zm00001d040493_P001 | EnsemblPlants:Zm00001d040493_T001 | EnsemblPlantsGene:Zm00001d040493 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:ONM31448.1 | TMHMM:TMhelix | UniParc:UPI0008441511 |
| UniProt:A0A1D6MR22 | MapMan:35.1 | : | : | : | : |
Description
Ergosterol biosynthetic protein 28
Coordinates
chr3:-:46552324..46560663
Molecular Weight (calculated)
19675.2 Da
IEP (calculated)
9.166
GRAVY (calculated)
0.579
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSNTTLAL RPSRTVSSIL AWTLLPRVPK ASMAVPLKLK KRGMPALGWW LMAVGSLRSA FTWSCFFGSA SLCSATYSEI QVTGVHGRTV AVWTLLSCTL
101: CFLCAFNLSS KPLYAATFLS IVYAIGHLSV ECVVYHTISA ASLAPFTFIT VTTMCLDAAS VELGWPQPPS RSVYFQATMT C
101: CFLCAFNLSS KPLYAATFLS IVYAIGHLSV ECVVYHTISA ASLAPFTFIT VTTMCLDAAS VELGWPQPPS RSVYFQATMT C
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [extracellular,golgi]
SUBAcon: [extracellular,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.