Factsheet for HORVU1Hr1G028210.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plastid, endoplasmic reticulum, mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10030.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G10030.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G10030.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G10030.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT1G10030.1	HORVU2Hr1G081800.3	AT4G26455.1	21798944
AT1G10030.1	HORVU5Hr1G071910.1	AT4G26455.1	21798944
AT1G10030.1	HORVU7Hr1G048940.3	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G056080.4	Barley	endoplasmic reticulum, vacuole	35.19	86.36
HORVU4Hr1G011970.1	Barley	endoplasmic reticulum, extracellular, mitochondrion, plastid	86.11	68.38
HORVU6Hr1G068400.2	Barley	endoplasmic reticulum, extracellular	87.04	66.67
Os12t0633200-01	Rice	extracellular, golgi	74.07	57.55
AT1G10030.1	Thale cress	extracellular, golgi	66.67	55.81
TraesCS2A01G357200.1	Wheat	extracellular, golgi	73.15	55.63
Bra018466.1-P	Field mustard	extracellular	65.74	55.04
CDY63742	Canola	extracellular, golgi	65.74	55.04
CDY57928	Canola	extracellular, golgi, vacuole	65.74	55.04
CDY31053	Canola	extracellular	65.74	55.04
TraesCS2D01G356000.1	Wheat	extracellular, golgi, plasma membrane	72.22	54.93
CDY20664	Canola	extracellular	64.81	53.85
Zm00001d037522_P001	Maize	extracellular, golgi	70.37	53.52
GSMUA_Achr7P08060_001	Banana	extracellular, golgi, plasma membrane	63.89	53.08
OQU79719	Sorghum	extracellular, golgi	69.44	52.82
TraesCS2B01G376400.1	Wheat	golgi	68.52	52.11
EES19099	Sorghum	golgi, plasma membrane	69.44	52.08
GSMUA_Achr6P30120_001	Banana	extracellular	62.04	51.54
VIT_18s0001g08330.t01	Wine grape	extracellular	62.04	51.15
KRH62124	Soybean	extracellular, golgi	60.19	50.39
PGSC0003DMT400012718	Potato	extracellular, golgi	60.19	50.39
Zm00001d031200_P002	Maize	golgi, plasma membrane	69.44	50.0
KRH52827	Soybean	extracellular	59.26	49.61
Solyc04g077150.2.1	Tomato	extracellular, golgi	58.33	48.84
HORVU2Hr1G086900.2	Barley	golgi, plasma membrane	72.22	47.27
Bra019965.1-P	Field mustard	golgi, plasma membrane	64.81	42.68
HORVU0Hr1G015930.1	Barley	extracellular	53.7	41.43

Protein Annotations

EnsemblPlants:HORVU1Hr1G028210.2	EnsemblPlantsGene:HORVU1Hr1G028210	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Erg28
PANTHER:PTHR15451	PFAM:PF03694	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B4885C9	UniProt:A0A287F0C7
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:149739921..149741059

Molecular Weight (calculated)

12003.8 Da

IEP (calculated)

7.941

GRAVY (calculated)

0.592

Length

108 amino acids

Sequence
(BLAST)

001: APPSPLPSYP AGSLPWLMLV GSLRLSSVWF GFFNIWALRV AVFSQTDMTE IHDRTIGVWT LLTCTLCFLC AFNLENKPLE YLIYHTIAAA NLSTAGFFTG
101: TIILKKTC

Best Arabidopsis Sequence Match ( AT1G10030.1 )
(BLAST)

001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS

Arabidopsis Description

ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [extracellular,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.