CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36586
CDY61373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28080.1	CDY36586	AT1G15760.1	21798944
AT3G28080.1	CDY61373	AT1G15760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72470	Canola	plasma membrane	67.45	99.14
CDX95070	Canola	plasma membrane	67.45	99.14
CDX85185	Canola	golgi, plasma membrane, vacuole	86.51	82.4
CDX86450	Canola	plasma membrane	88.27	80.27
AT3G28100.1	Thale cress	plasma membrane	82.11	79.32
Bra033037.1-P	Field mustard	golgi, plasma membrane, vacuole	93.84	79.01
AT3G28070.1	Thale cress	golgi, plasma membrane, plastid, vacuole	79.18	75.0
AT3G28080.1	Thale cress	golgi, plasma membrane, vacuole	78.3	74.58
CDY04006	Canola	cytosol, peroxisome, plasma membrane	74.78	72.24
CDY13131	Canola	plasma membrane, vacuole	28.15	54.24
CDY44584	Canola	golgi, plasma membrane, plastid	19.35	52.8
CDX85184	Canola	plasma membrane	55.13	51.79
CDY53118	Canola	plasma membrane	51.03	51.79
CDY59916	Canola	cytosol, plasma membrane, plastid	15.84	50.0
CDY69634	Canola	extracellular	12.32	48.84
CDY00140	Canola	golgi, plasma membrane, vacuole	51.91	47.97
CDY04005	Canola	plasma membrane	51.61	47.96
CDY20031	Canola	plasma membrane	51.32	47.43
CDY59918	Canola	extracellular	17.3	45.04
CDY66864	Canola	golgi, plasma membrane, vacuole	43.7	42.45
CDX67449	Canola	golgi, plasma membrane, vacuole	45.16	42.19
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	11.73	42.11
CDY11678	Canola	plasma membrane	44.87	42.03
CDY15932	Canola	golgi, nucleus, plasma membrane	44.57	41.87
CDX86451	Canola	cytosol	54.55	41.8
CDX99640	Canola	golgi, plasma membrane, vacuole	41.94	41.57
CDY44581	Canola	plasma membrane	40.47	41.32
CDY11676	Canola	golgi, plasma membrane, vacuole	43.99	40.98
CDY36827	Canola	golgi, plasma membrane, plastid	44.28	40.81
CDY11677	Canola	golgi, nucleus, plasma membrane	44.28	40.59
CDY11675	Canola	golgi, nucleus, plasma membrane	34.02	40.56
CDY38468	Canola	extracellular	13.78	39.83
CDX99641	Canola	plasma membrane	40.76	39.83
CDY15933	Canola	plasma membrane	40.76	39.71
CDX99639	Canola	plasma membrane	21.41	36.32
CDX67447	Canola	plasma membrane	43.4	31.42
CDY36829	Canola	plasma membrane	28.74	27.0
CDY38802	Canola	golgi, plasma membrane, vacuole	29.33	26.67
CDY03759	Canola	plasma membrane	29.03	26.4
CDX68349	Canola	plasma membrane	28.45	26.01
CDY61698	Canola	plasma membrane	28.45	26.01
CDY23506	Canola	plasma membrane	28.15	25.74
CDY42998	Canola	golgi, plasma membrane	28.15	25.6
CDY65646	Canola	extracellular, plasma membrane	22.29	24.84
CDX67448	Canola	plasma membrane	46.04	21.27
CDY11606	Canola	plasma membrane	28.74	20.85

Protein Annotations

MapMan:24.2.1.5	GO:A0A078IJZ7	UniProt:A0A078IJZ7	EnsemblPlants:CDY49754	ProteinID:CDY49754	ProteinID:CDY49754.1
InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00093756001	PFAM:PF00892
PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EED853	InterPro:WAT1-related
SEG:seg	:	:	:	:	:

Description

BnaA02g29170DWAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJZ7]

Coordinates

chrLK032857:-:4579..7206

Molecular Weight (calculated)

37328.4 Da

IEP (calculated)

9.294

GRAVY (calculated)

0.730

Length

341 amino acids

Sequence
(BLAST)

001: MLASETGIVG LNTLFKAATS KGLNSYAFLG YSYLLGSLLL LPSHIFSNRS RSLPPLSFSI LSKIGLLGLL GSMYVITGYI GVKYSNPTLA SAISNITPAL
101: TFILAIIFRM EKVNFKERSS VAKVMGTVLS LVGALVVVLY HGPSVFVASS PPYLHFRQLS PSLSSSNSDW IIGGCLLTIK DIFVSISFIL QAHIMTEYPA
201: AFTVSFFYSM CVSILTSLTG LVVEKDNPSI WIIRFDITLI SIVTMGIFTP VYYVIHSWTV RYKGPLYLAI FKPLSILIAV VMSAIFLGDS LYLGCLIGGV
301: LITLGFYAVM WGKANEDKTR LLTLLENEKT PLLLNHNDDQ I

Best Arabidopsis Sequence Match ( AT3G28100.1 )
(BLAST)

001: MARTVSLWRR EAVFLTAMLA TETGVVGIST LFKVATSKGL NLYAFLGYSY LLASLLLLPS LFFTDRSRSL PPLSLSILSK IGLLGLLGSM YVITGYIGIE
101: YSSPTLASAI SNITPALTFI LAIIFRMEKV SFKERSSVAK VMGTILSLIG ALVVVLYHGP RVFVASSPPY INFRQLSPPL SSSNSDWLIG GALLTIRDIF
201: VSVSFILQAK IMSTYPAAFT VSFLYIVSVS IVTSMIGLVV EKNNPSVWII RFDITLITIV TMAIITSVYY VIHSWTVRHK GPLYLAIFKP LSILIAVVMS
301: AVFLNDSLYL GCLIGGLLIT LGFYAVMWGK ANEEKDQLLL VSGKERTPLL LNG

Arabidopsis Description

WAT1-related protein At3g28100 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.