CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
plasma membrane 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36586
CDY61373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28080.1	CDY36586	AT1G15760.1	21798944
AT3G28080.1	CDY61373	AT1G15760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025321.1-P	Field mustard	plasma membrane	100.0	100.0
CDX85185	Canola	golgi, plasma membrane, vacuole	91.73	96.09
CDY49754	Canola	plasma membrane	80.27	88.27
CDX95070	Canola	plasma membrane	53.33	86.21
CDX72470	Canola	plasma membrane	53.33	86.21
AT3G28100.1	Thale cress	plasma membrane	76.53	81.3
AT3G28070.1	Thale cress	golgi, plasma membrane, plastid, vacuole	73.33	76.39
AT3G28080.1	Thale cress	golgi, plasma membrane, vacuole	72.8	76.26
CDY04006	Canola	cytosol, peroxisome, plasma membrane	60.27	64.02
CDY69634	Canola	extracellular	12.8	55.81
CDY44584	Canola	golgi, plasma membrane, plastid	18.13	54.4
CDY13131	Canola	plasma membrane, vacuole	25.07	53.11
CDX85184	Canola	plasma membrane	50.67	52.34
CDY53118	Canola	plasma membrane	45.6	50.89
CDY59918	Canola	extracellular	17.33	49.62
CDY59916	Canola	cytosol, plasma membrane, plastid	14.13	49.07
CDY00140	Canola	golgi, plasma membrane, vacuole	47.2	47.97
CDY04005	Canola	plasma membrane	46.93	47.96
CDY20031	Canola	plasma membrane	46.67	47.43
CDX67449	Canola	golgi, plasma membrane, vacuole	43.73	44.93
CDY11678	Canola	plasma membrane	43.47	44.78
CDY15932	Canola	golgi, nucleus, plasma membrane	42.93	44.35
CDY44581	Canola	plasma membrane	38.93	43.71
CDX99640	Canola	golgi, plasma membrane, vacuole	40.0	43.6
CDY11676	Canola	golgi, plasma membrane, vacuole	42.13	43.17
CDX86451	Canola	cytosol	50.4	42.47
CDY38468	Canola	extracellular	13.33	42.37
CDY11677	Canola	golgi, nucleus, plasma membrane	41.87	42.2
CDY36827	Canola	golgi, plasma membrane, plastid	41.6	42.16
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	10.67	42.11
CDY66864	Canola	golgi, plasma membrane, vacuole	39.2	41.88
CDX99641	Canola	plasma membrane	38.67	41.55
CDY15933	Canola	plasma membrane	38.67	41.43
CDY11675	Canola	golgi, nucleus, plasma membrane	31.2	40.91
CDX99639	Canola	plasma membrane	20.53	38.31
CDX67447	Canola	plasma membrane	40.0	31.85
CDY36829	Canola	plasma membrane	28.53	29.48
CDY03759	Canola	plasma membrane	26.93	26.93
CDX68349	Canola	plasma membrane	26.67	26.81
CDY38802	Canola	golgi, plasma membrane, vacuole	26.67	26.67
CDY42998	Canola	golgi, plasma membrane	26.67	26.67
CDY23506	Canola	plasma membrane	26.4	26.54
CDY61698	Canola	plasma membrane	25.6	25.74
CDY65646	Canola	extracellular, plasma membrane	19.47	23.86
CDX67448	Canola	plasma membrane	43.47	22.09
CDY11606	Canola	plasma membrane	26.67	21.28

Protein Annotations

EnsemblPlants:CDX86450	EnsemblPlantsGene:GSBRNA2T00144598001	GO:A0A078DB23	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	PFAM:PF00892	ProteinID:CDX86450	ProteinID:CDX86450.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000253FBCD	MapMan:24.2.1.5	:

Description

BnaA06g31670D

Coordinates

chrLK031845:-:1620419..1623182

Molecular Weight (calculated)

41360.4 Da

IEP (calculated)

9.705

GRAVY (calculated)

0.672

Length

375 amino acids

Sequence
(BLAST)

001: MAGAVSLWRR EATFLTAMLA SETGIVGLNT LFKAATSKGL NSYTFLGYSY LLASLLLLPS HLFSNRSRSL PPLSFSILCK IGLLGLVGST YVITSYIGVK
101: YSNPTLASAI SNITPALTFI LAVIFRMEKV RFKERSSVAK VMGTILSLVG ALVVVLYHGP RVFIVLSAPN LNFHQLSPSL SSSNSNWIIG GCLLTIRDIF
201: VSVSFILQAH IMSEYPAAFT VSFFYTLFVS IITSLTGLVV ERNNPSVWII RFDITLICIL AMGIFTPVYY VIHSWTVRYK GPLYLAIFKP LSILIAVIMS
301: AIFLGDSLYL GCLIGGVLIT IGFYAVMWGK ANEEKTRLLL LTEKENSPLL LNHNDDQINL EPKRNKLHTF ECVNA

Best Arabidopsis Sequence Match ( AT3G28100.1 )
(BLAST)

001: MARTVSLWRR EAVFLTAMLA TETGVVGIST LFKVATSKGL NLYAFLGYSY LLASLLLLPS LFFTDRSRSL PPLSLSILSK IGLLGLLGSM YVITGYIGIE
101: YSSPTLASAI SNITPALTFI LAIIFRMEKV SFKERSSVAK VMGTILSLIG ALVVVLYHGP RVFVASSPPY INFRQLSPPL SSSNSDWLIG GALLTIRDIF
201: VSVSFILQAK IMSTYPAAFT VSFLYIVSVS IVTSMIGLVV EKNNPSVWII RFDITLITIV TMAIITSVYY VIHSWTVRHK GPLYLAIFKP LSILIAVVMS
301: AVFLNDSLYL GCLIGGLLIT LGFYAVMWGK ANEEKDQLLL VSGKERTPLL LNG

Arabidopsis Description

WAT1-related protein At3g28100 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.