Factsheet for Bra025321.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
plasma membrane 6
extracellular 2
golgi 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026110.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28080.1	Bra026110.1-P	AT1G15760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86450	Canola	plasma membrane	100.0	100.0
CDX85185	Canola	golgi, plasma membrane, vacuole	91.73	96.09
AT3G28100.1	Thale cress	plasma membrane	76.53	81.3
AT3G28070.1	Thale cress	golgi, plasma membrane, plastid, vacuole	73.33	76.39
AT3G28080.1	Thale cress	golgi, plasma membrane, vacuole	72.8	76.26
Bra033037.1-P	Field mustard	golgi, plasma membrane, vacuole	81.07	75.06
Bra027523.1-P	Field mustard	plasma membrane, vacuole	25.07	53.11
Bra033035.1-P	Field mustard	plasma membrane	47.2	48.23
Bra039062.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.33	48.02
Bra030337.1-P	Field mustard	golgi, nucleus, plasma membrane	42.93	44.35
Bra028452.1-P	Field mustard	golgi, plasma membrane, vacuole	42.4	43.68
Bra030336.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	10.67	42.11
Bra030338.1-P	Field mustard	plasma membrane	38.67	41.55
Bra025320.1-P	Field mustard	cytosol	50.4	41.36
Bra025598.1-P	Field mustard	plasma membrane	26.4	36.8
Bra028450.1-P	Field mustard	plasma membrane	40.0	32.12
Bra016228.1-P	Field mustard	extracellular, plasma membrane, vacuole	26.13	27.22
Bra007904.1-P	Field mustard	golgi, plasma membrane	26.93	26.93
Bra003959.1-P	Field mustard	golgi, plasma membrane	26.67	26.81
Bra027819.1-P	Field mustard	plasma membrane	25.87	26.01
Bra028451.1-P	Field mustard	plasma membrane	43.47	22.0

Protein Annotations

MapMan:24.2.1.5	EnsemblPlantsGene:Bra025321	EnsemblPlants:Bra025321.1	EnsemblPlants:Bra025321.1-P	InterPro:EamA_dom	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	UniProt:M4E965	PFAM:PF00892	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000253FBCD	InterPro:WAT1-related	SEG:seg	:

Description

AT3G28100 (E=2e-139) | nodulin MtN21 family protein

Coordinates

chrA06:-:22188076..22190840

Molecular Weight (calculated)

41360.4 Da

IEP (calculated)

9.705

GRAVY (calculated)

0.672

Length

375 amino acids

Sequence
(BLAST)

001: MAGAVSLWRR EATFLTAMLA SETGIVGLNT LFKAATSKGL NSYTFLGYSY LLASLLLLPS HLFSNRSRSL PPLSFSILCK IGLLGLVGST YVITSYIGVK
101: YSNPTLASAI SNITPALTFI LAVIFRMEKV RFKERSSVAK VMGTILSLVG ALVVVLYHGP RVFIVLSAPN LNFHQLSPSL SSSNSNWIIG GCLLTIRDIF
201: VSVSFILQAH IMSEYPAAFT VSFFYTLFVS IITSLTGLVV ERNNPSVWII RFDITLICIL AMGIFTPVYY VIHSWTVRYK GPLYLAIFKP LSILIAVIMS
301: AIFLGDSLYL GCLIGGVLIT IGFYAVMWGK ANEEKTRLLL LTEKENSPLL LNHNDDQINL EPKRNKLHTF ECVNA

Best Arabidopsis Sequence Match ( AT3G28100.1 )
(BLAST)

001: MARTVSLWRR EAVFLTAMLA TETGVVGIST LFKVATSKGL NLYAFLGYSY LLASLLLLPS LFFTDRSRSL PPLSLSILSK IGLLGLLGSM YVITGYIGIE
101: YSSPTLASAI SNITPALTFI LAIIFRMEKV SFKERSSVAK VMGTILSLIG ALVVVLYHGP RVFVASSPPY INFRQLSPPL SSSNSDWLIG GALLTIRDIF
201: VSVSFILQAK IMSTYPAAFT VSFLYIVSVS IVTSMIGLVV EKNNPSVWII RFDITLITIV TMAIITSVYY VIHSWTVRHK GPLYLAIFKP LSILIAVVMS
301: AVFLNDSLYL GCLIGGLLIT LGFYAVMWGK ANEEKDQLLL VSGKERTPLL LNG

Arabidopsis Description

WAT1-related protein At3g28100 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.