Factsheet for Bra033035.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28050.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G28050.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G28050.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G28050.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69634	Canola	extracellular	23.43	100.0
AT3G28050.1	Thale cress	plasma membrane	92.64	92.64
Bra039062.1-P	Field mustard	extracellular, plasma membrane, vacuole	88.83	92.09
Solyc02g087060.2.1	Tomato	golgi, plasma membrane, vacuole	61.31	61.81
VIT_14s0066g01650.t01	Wine grape	golgi, plasma membrane, vacuole	58.04	59.17
KRG88846	Soybean	plasma membrane	57.77	57.14
KRH75315	Soybean	plasma membrane	56.68	56.68
Bra027523.1-P	Field mustard	plasma membrane, vacuole	23.71	49.15
Bra025321.1-P	Field mustard	plasma membrane	48.23	47.2
Bra030337.1-P	Field mustard	golgi, nucleus, plasma membrane	44.14	44.63
Bra030338.1-P	Field mustard	plasma membrane	42.23	44.41
Bra033037.1-P	Field mustard	golgi, plasma membrane, vacuole	48.23	43.7
Bra030336.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	11.17	43.16
Bra028452.1-P	Field mustard	golgi, plasma membrane, vacuole	42.23	42.58
Bra025320.1-P	Field mustard	cytosol	50.14	40.26
Bra025598.1-P	Field mustard	plasma membrane	25.89	35.32
Bra028450.1-P	Field mustard	plasma membrane	43.32	34.05
Bra016228.1-P	Field mustard	extracellular, plasma membrane, vacuole	32.15	32.78
Bra007904.1-P	Field mustard	golgi, plasma membrane	32.97	32.27
Bra003959.1-P	Field mustard	golgi, plasma membrane	32.43	31.9
Bra027819.1-P	Field mustard	plasma membrane	29.7	29.22
Bra028451.1-P	Field mustard	plasma membrane	44.41	22.0

Protein Annotations

EnsemblPlants:Bra033035.1	EnsemblPlants:Bra033035.1-P	EnsemblPlantsGene:Bra033035	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:EamA_dom	InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	PFAM:PF00892	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002547201	UniProt:M4EW52	MapMan:24.2.1.5	:

Description

AT3G28050 (E=2e-180) | nodulin MtN21 family protein

Coordinates

chrA02:-:21786455..21789044

Molecular Weight (calculated)

40321.6 Da

IEP (calculated)

8.091

GRAVY (calculated)

0.534

Length

367 amino acids

Sequence
(BLAST)

001: MTRKYFQREV LPVTALVIME CANVGLNTLF KAATLQGMGF HVFIVYSYGL AALLLLPSLF FSYRSRTLPP MNFSILYKVV LLGLIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA ILFRMESVSF KRTSSVAKML GTIVSIGGAF IVTLYNGPVV INMSPPSISL RSQSPNHDWI IGAGFLAVEY FMVPLWYIVQ
201: TQIMREYPSE FTVVCYYSFG VSFWTGLVTL FTEGSDLSAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEMALV EDDNKANNED ANEADLDSPS GSQKAPLLES YKNDEHV

Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)

001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV

Arabidopsis Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.