CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 3
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99641	Canola	plasma membrane	95.76	32.38
Bra030338.1-P	Field mustard	plasma membrane	94.92	32.09
CDY15933	Canola	plasma membrane	94.92	32.0
AT4G15540.1	Thale cress	plasma membrane	83.9	28.53
CDY11675	Canola	golgi, nucleus, plasma membrane	67.8	27.97
CDY44581	Canola	plasma membrane	69.49	24.55
CDX99640	Canola	golgi, plasma membrane, vacuole	67.8	23.26
CDY11678	Canola	plasma membrane	71.19	23.08
CDX67449	Canola	golgi, plasma membrane, vacuole	71.19	23.01
CDY15932	Canola	golgi, nucleus, plasma membrane	70.34	22.86
CDY11677	Canola	golgi, nucleus, plasma membrane	71.19	22.58
CDY11676	Canola	golgi, plasma membrane, vacuole	67.8	21.86
CDY36827	Canola	golgi, plasma membrane, plastid	67.8	21.62
CDY66864	Canola	golgi, plasma membrane, vacuole	61.02	20.51
CDY13131	Canola	plasma membrane, vacuole	27.97	18.64
VIT_14s0066g01640.t01	Wine grape	plasma membrane	55.93	18.38
CDX95070	Canola	plasma membrane	35.59	18.1
CDX72470	Canola	plasma membrane	35.59	18.1
CDY36829	Canola	plasma membrane	54.24	17.63
CDX67447	Canola	plasma membrane	67.8	16.99
KRH46524	Soybean	plasma membrane	52.54	16.89
CDY53118	Canola	plasma membrane	40.68	14.29
CDX85185	Canola	golgi, plasma membrane, vacuole	43.22	14.25
CDY49754	Canola	plasma membrane	39.83	13.78
CDX86450	Canola	plasma membrane	42.37	13.33
CDY20031	Canola	plasma membrane	41.53	13.28
CDY00140	Canola	golgi, plasma membrane, vacuole	40.68	13.01
CDY04005	Canola	plasma membrane	39.83	12.81
CDX85184	Canola	plasma membrane	38.98	12.67
CDY04006	Canola	cytosol, peroxisome, plasma membrane	37.29	12.46
CDY65646	Canola	extracellular, plasma membrane	28.81	11.11
CDX67448	Canola	plasma membrane	66.95	10.7
CDX86451	Canola	cytosol	39.83	10.56
CDY38802	Canola	golgi, plasma membrane, vacuole	32.2	10.13
CDY42998	Canola	golgi, plasma membrane	32.2	10.13
CDY03759	Canola	plasma membrane	30.51	9.6
CDX68349	Canola	plasma membrane	29.66	9.38
CDY23506	Canola	plasma membrane	29.66	9.38
CDY59918	Canola	extracellular	10.17	9.16
CDY61698	Canola	plasma membrane	28.81	9.12
CDY11606	Canola	plasma membrane	31.36	7.87
CDX99639	Canola	plasma membrane	12.71	7.46
CDY44584	Canola	golgi, plasma membrane, plastid	3.39	3.2
CDY59916	Canola	cytosol, plasma membrane, plastid	0.85	0.93
CDY69634	Canola	extracellular	0.0	0.0
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:CDY38468	EnsemblPlantsGene:GSBRNA2T00065913001	GO:A0A078HNS8	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF48	ProteinID:CDY38468	ProteinID:CDY38468.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF2FB9	UniProt:A0A078HNS8	MapMan:24.2.1.5	:

Description

BnaA10g16900DBnaA10g16900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNS8]

Coordinates

chrLK032424:+:187693..188414

Molecular Weight (calculated)

13312.8 Da

IEP (calculated)

6.499

GRAVY (calculated)

0.947

Length

118 amino acids

Sequence
(BLAST)

001: MLAVFFRMEQ VMLRSSATQA KINGTIVSIS GALVIVLYKG PKLLVAASFT SCEPSWIIGG LLLVLQFLLL SVWYILQTQI MEIYPEEISV VLFYNMCATL
101: ISALVYLFVE RELNSWKL

Best Arabidopsis Sequence Match ( AT4G15540.1 )
(BLAST)

001: MREETVSWKY FKRDVVPFTA MIAIECTTVG SSILYKAATL RGFSFYVFVF YAYVGATLVL LLLSLIFGRS RSLPTAKSSL FFKIFLLALL GLTSRVAGCK
101: GIEYSSPTLS SAISNLTPAF TFILAIFFRM EQVMLRSSAT QAKIIGTIVS ISGALVIVLY KGPKLLVAAS FTSFESSWII GGLLLGLQFL LLSVWFILQT
201: HIMEIYPEEI AVVFCYNLCA TLISGTVCLL VEKDLNSWQL KPGFSLASVI YSGLFDTSLG SVIHTWGLHV KGPVYISLFK PLSIAIAVAM AAIFLGDTLH
301: LGSVIGSVIL SFGFYTVIWG KAREDSTKTV SDSEQSLLLP SHDREED

Arabidopsis Description

WAT1-related protein At4g15540 [Source:UniProtKB/Swiss-Prot;Acc:F4JK59]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.