Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28080.1 | CDY36586 | AT1G15760.1 | 21798944 |
| AT3G28080.1 | CDY61373 | AT1G15760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72470 | Canola | plasma membrane | 65.44 | 99.57 |
| CDX95070 | Canola | plasma membrane | 65.44 | 99.57 |
| CDY49754 | Canola | plasma membrane | 72.24 | 74.78 |
| CDX85185 | Canola | golgi, plasma membrane, vacuole | 62.89 | 62.01 |
| CDX86450 | Canola | plasma membrane | 64.02 | 60.27 |
| AT3G28100.1 | Thale cress | plasma membrane | 59.77 | 59.77 |
| AT3G28070.1 | Thale cress | golgi, plasma membrane, plastid, vacuole | 58.07 | 56.94 |
| AT3G28080.1 | Thale cress | golgi, plasma membrane, vacuole | 57.22 | 56.42 |
| CDY13131 | Canola | plasma membrane, vacuole | 26.91 | 53.67 |
| CDY59916 | Canola | cytosol, plasma membrane, plastid | 15.3 | 50.0 |
| CDY15931 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 11.33 | 42.11 |
| CDY38468 | Canola | extracellular | 12.46 | 37.29 |
| CDX85184 | Canola | plasma membrane | 37.96 | 36.91 |
| CDY53118 | Canola | plasma membrane | 34.28 | 36.01 |
| CDY04005 | Canola | plasma membrane | 36.26 | 34.88 |
| CDY00140 | Canola | golgi, plasma membrane, vacuole | 35.98 | 34.42 |
| CDY20031 | Canola | plasma membrane | 35.41 | 33.88 |
| CDY66864 | Canola | golgi, plasma membrane, vacuole | 29.75 | 29.91 |
| CDY36827 | Canola | golgi, plasma membrane, plastid | 31.16 | 29.73 |
| CDY11678 | Canola | plasma membrane | 30.59 | 29.67 |
| CDX86451 | Canola | cytosol | 37.39 | 29.66 |
| CDX67449 | Canola | golgi, plasma membrane, vacuole | 30.59 | 29.59 |
| CDY15932 | Canola | golgi, nucleus, plasma membrane | 30.03 | 29.2 |
| CDY44581 | Canola | plasma membrane | 27.48 | 29.04 |
| CDY11676 | Canola | golgi, plasma membrane, vacuole | 29.75 | 28.69 |
| CDX99640 | Canola | golgi, plasma membrane, vacuole | 27.76 | 28.49 |
| CDX99641 | Canola | plasma membrane | 27.76 | 28.08 |
| CDY15933 | Canola | plasma membrane | 27.76 | 28.0 |
| CDY11677 | Canola | golgi, nucleus, plasma membrane | 29.46 | 27.96 |
| CDY11675 | Canola | golgi, nucleus, plasma membrane | 19.26 | 23.78 |
| CDX99639 | Canola | plasma membrane | 13.31 | 23.38 |
| CDY65646 | Canola | extracellular, plasma membrane | 19.26 | 22.22 |
| CDY38802 | Canola | golgi, plasma membrane, vacuole | 23.23 | 21.87 |
| CDY03759 | Canola | plasma membrane | 22.95 | 21.6 |
| CDX67447 | Canola | plasma membrane | 28.61 | 21.44 |
| CDY23506 | Canola | plasma membrane | 22.38 | 21.18 |
| CDX68349 | Canola | plasma membrane | 22.1 | 20.91 |
| CDY42998 | Canola | golgi, plasma membrane | 22.1 | 20.8 |
| CDY59918 | Canola | extracellular | 7.08 | 19.08 |
| CDY61698 | Canola | plasma membrane | 20.11 | 19.03 |
| CDY11606 | Canola | plasma membrane | 22.66 | 17.02 |
| CDY36829 | Canola | plasma membrane | 17.0 | 16.53 |
| CDX67448 | Canola | plasma membrane | 32.58 | 15.58 |
| CDY69634 | Canola | extracellular | 3.68 | 15.12 |
| CDY44584 | Canola | golgi, plasma membrane, plastid | 4.53 | 12.8 |
Protein Annotations
| EnsemblPlants:CDY04006 | EnsemblPlantsGene:GSBRNA2T00117557001 | GO:A0A078ERX4 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | InterPro:WAT1-related |
| PANTHER:PTHR31218 | PANTHER:PTHR31218:SF64 | ProteinID:CDY04006 | ProteinID:CDY04006.1 | SUPFAM:SSF103481 | TMHMM:TMhelix |
| UniParc:UPI0004EDDA1D | MapMan:24.2.1.5 | : | : | : | : |
Description
BnaC02g37210D
Coordinates
chrLK031948:+:331270..333536
Molecular Weight (calculated)
39981.0 Da
IEP (calculated)
9.198
GRAVY (calculated)
0.371
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHKTTFQFI ISNNGRSRKS LEERGRVLDG HACVRNWYRR NEYSVQSSDF KGTQLLRFPR LFLSSWFPST SSFTYLLQQV SNNPIYLFIY QYRTITILLC
101: GEQHAATRCV YIGFSLAASL LMEKVNFKER SSVAKVMGTV LSLVGAPVVV LYHGPRVFVA SSPPYLHFRQ LSPSLFSSNS DWIIGGCLLT IKDIFVSISF
201: ILQAHIMTEY PAAFTVSFFY SMCVSILTSL TGLVVEKDNP SIWIIRFDIT LISIVTMGIF TPVYYVIHSW TVRYKGPLYL AIFKPLSILI AVVMSAIFLG
301: DSLYLGCLIG GVLITLGFYA VMWGKANEDK TRLLTLLENE KTPLLLNHND DQI
101: GEQHAATRCV YIGFSLAASL LMEKVNFKER SSVAKVMGTV LSLVGAPVVV LYHGPRVFVA SSPPYLHFRQ LSPSLFSSNS DWIIGGCLLT IKDIFVSISF
201: ILQAHIMTEY PAAFTVSFFY SMCVSILTSL TGLVVEKDNP SIWIIRFDIT LISIVTMGIF TPVYYVIHSW TVRYKGPLYL AIFKPLSILI AVVMSAIFLG
301: DSLYLGCLIG GVLITLGFYA VMWGKANEDK TRLLTLLENE KTPLLLNHND DQI
001: MPIMAGTASP WRREAVFLTA MLVVETSVVG ISTLFKFATS KGLNIYPFLG YSYLLASLLL LPSLFFTNRS SSLPPLSVSI LSKIGLLGFL GSMYVITGYI
101: GIEYSSPTLA SAINNITPAL TFILAIIFRM EKVSFKERSS LAKLMGTILS LIGALVVIFY HGPRVFLASS PPYVNFRQFS PPLSSSNSDW LIGGALLTMQ
201: GIFVSVSFIL QAHIMSVYPA AFRVSFLYTV CVSIVTSTIG LVVEKNNPSV WIIHFDITLI TIVTMAIVTS VYYVIHSWTV RHKGPLYLAI FKPLSILIAV
301: VMGAIFLNDS LYLGCLIGGI LITLGFYAVM WGKANEEKDQ LSFSEKEKTP LLLNRKNDQV
101: GIEYSSPTLA SAINNITPAL TFILAIIFRM EKVSFKERSS LAKLMGTILS LIGALVVIFY HGPRVFLASS PPYVNFRQFS PPLSSSNSDW LIGGALLTMQ
201: GIFVSVSFIL QAHIMSVYPA AFRVSFLYTV CVSIVTSTIG LVVEKNNPSV WIIHFDITLI TIVTMAIVTS VYYVIHSWTV RHKGPLYLAI FKPLSILIAV
301: VMGAIFLNDS LYLGCLIGGI LITLGFYAVM WGKANEEKDQ LSFSEKEKTP LLLNRKNDQV
Arabidopsis Description
WAT1-related protein At3g28070 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ7]
SUBAcon: [plasma membrane,golgi,plastid,vacuole]
SUBAcon: [plasma membrane,golgi,plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.