CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, mitochondrion

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 3
golgi 3
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002066_P001	Maize	plasma membrane	90.21	88.06
HORVU2Hr1G113560.1	Barley	golgi, plasma membrane	74.31	80.73
TraesCS2D01G513800.1	Wheat	golgi, plastid	77.68	80.38
TraesCS2A01G512400.1	Wheat	golgi	77.37	80.06
Os04t0649900-01	Rice	mitochondrion	77.06	79.25
TraesCS2B01G540300.1	Wheat	golgi	76.45	79.11
EER88850	Sorghum	plastid	53.21	52.41
OQU84413	Sorghum	golgi, mitochondrion	50.46	51.56
GSMUA_Achr9P25260_001	Banana	golgi	50.76	50.61
VIT_03s0063g00030.t01	Wine grape	plastid	33.95	50.45
GSMUA_Achr8P03360_001	Banana	golgi	50.15	50.0
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	42.81	48.61
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	48.32	48.47
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	42.51	46.03
Solyc02g093090.1.1	Tomato	extracellular, nucleus	42.51	45.13
PGSC0003DMT400064322	Potato	plastid	42.2	44.81
VIT_07s0031g00110.t01	Wine grape	golgi	42.2	44.52
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	42.51	44.27
CDX81329	Canola	plastid	41.28	43.83
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	42.2	43.53
KRH50341	Soybean	golgi, plastid	41.28	43.41
KRH77040	Soybean	mitochondrion	40.06	43.09
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	41.28	42.99
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	41.28	42.86
Bra012143.1-P	Field mustard	plastid	40.98	42.54
KRH28432	Soybean	mitochondrion	40.06	42.53
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	40.67	42.22
KRH57814	Soybean	mitochondrion	40.37	41.77
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	41.28	41.67
KRH04549	Soybean	plastid	40.06	41.59
CDY17753	Canola	endoplasmic reticulum, golgi	40.98	41.36
CDY30600	Canola	endoplasmic reticulum, golgi	40.98	41.36
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	40.67	41.3
KRH70689	Soybean	plastid	40.06	40.56
Bra013107.1-P	Field mustard	plastid	40.37	40.24
CDY13145	Canola	plastid	40.06	39.94
Bra039840.1-P	Field mustard	plastid	39.45	39.69
CDY62313	Canola	plastid	38.84	39.69
CDY37228	Canola	plastid	39.14	39.63
CDX89660	Canola	plastid	39.76	39.27
AT2G15440.1	Thale cress	plastid	39.45	39.21
EES16857	Sorghum	mitochondrion	33.64	36.3
OQU82596	Sorghum	plastid	26.3	29.05
EES08266	Sorghum	mitochondrion	29.05	28.96

Protein Annotations

MapMan:35.1	EntrezGene:8079587	UniProt:A0A1B6PNF3	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0045492
InterPro:IRX15/IRX15L/IGXM	EnsemblPlants:KXG27192	ProteinID:KXG27192	ProteinID:KXG27192.2	PFAM:PF04669	PANTHER:PTHR31444
PANTHER:PTHR31444:SF3	InterPro:Polysacc_synth_dom	EnsemblPlantsGene:SORBI_3006G241900	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI0001A86D9C
RefSeq:XP_002447223.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58259612..58261624

Molecular Weight (calculated)

35198.6 Da

IEP (calculated)

8.139

GRAVY (calculated)

-0.170

Length

327 amino acids

Sequence
(BLAST)

001: MKSMGTRDKL AAASGHRRVL FVVFASCFAF ATFLTFLYTT SNFATAPGSA SASTASSTTT TSSGSSGGGG QAGLPLPVFE ALVHFASISN ATHRMSDTDI
101: RAISAVLRAR APCNLLVFGL GAESPLWLAL NHGGRTVFLE ENEFYVKYLE PRHPGMEAYD VSYTTKVRDF RDLLAAARAS RRKECRPIQN LLFSECRLAI
201: NDLPNDLYDV PWDMVLIDGP SGWNPNSPGR MPSIFTTAVL ARSGATAAKG RPTDVLVHDF QFEVEQVLSR EFLCDENRVA GSGTPSLGHF VIPGAGAGAG
301: DAFCAGQEDG GSSEESGEKT RRRRRRK

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.