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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • endoplasmic reticulum 2
  • nucleus 1
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
EER96942
EES02290
EES05123
EES14314
EES19830
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 EES05123 AT1G27300.1 21798944
AT1G33800.1 EES02290 AT3G16310.1 21798944
AT1G33800.1 EES19830 AT3G16310.1 21798944
AT1G33800.1 EER96942 AT4G26455.1 21798944
AT1G33800.1 EES14314 AT4G26455.1 21798944
AT1G33800.1 OQU81760 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d023950_P001 Maize mitochondrion 88.78 87.06
Zm00001d041782_P001 Maize plasma membrane 81.52 82.89
TraesCS5D01G319700.1 Wheat mitochondrion 78.55 79.87
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 78.88 79.67
TraesCS5A01G313000.1 Wheat mitochondrion 77.56 78.6
TraesCS5B01G313900.1 Wheat golgi, unclear 77.56 78.33
Os12t0204500-01 Rice endoplasmic reticulum, golgi 75.58 77.63
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 76.57 77.08
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 76.57 76.82
Zm00001d028737_P001 Maize golgi 41.91 75.15
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 75.58 74.84
HORVU7Hr1G120340.1 Barley plastid 75.58 64.15
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 51.49 55.91
KRH50678 Soybean cytosol 12.54 53.52
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 48.51 52.31
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 48.51 52.31
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 50.49 52.04
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 48.18 51.96
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 48.18 51.77
VIT_12s0035g01340.t01 Wine grape golgi 48.51 51.76
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 52.15 51.3
Solyc01g103360.2.1 Tomato plasma membrane 46.2 50.91
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 48.18 50.34
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 49.51 50.0
Bra028013.1-P Field mustard golgi 48.51 49.66
CDX93751 Canola golgi 48.51 49.66
CDY15292 Canola golgi 48.51 49.66
AT4G09990.1 Thale cress golgi 47.52 49.66
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 45.87 49.64
PGSC0003DMT400064018 Potato plasma membrane 45.21 49.64
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 41.25 49.6
CDY48797 Canola golgi, plasma membrane 48.51 49.49
AT1G33800.1 Thale cress golgi, plasma membrane 48.18 49.16
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 48.18 49.16
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 47.52 48.65
CDX96332 Canola endoplasmic reticulum, extracellular 47.52 48.65
EES08266 Sorghum mitochondrion 52.48 48.48
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 47.19 48.47
CDX72815 Canola endoplasmic reticulum, extracellular 47.52 47.84
KRH64803 Soybean golgi, plasma membrane 46.86 46.41
Solyc06g064800.1.1 Tomato extracellular, golgi 40.26 46.21
Zm00001d027968_P001 Maize cytosol, mitochondrion, plastid 45.54 44.52
CDY37946 Canola extracellular 37.29 42.64
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 32.34 40.5
KRH50677 Soybean mitochondrion 12.87 35.45
EER88850 Sorghum plastid 37.62 34.34
KXG27192 Sorghum golgi, mitochondrion, plastid 36.3 33.64
OQU84413 Sorghum golgi, mitochondrion 33.99 32.19
OQU82596 Sorghum plastid 29.04 29.73
Protein Annotations
MapMan:21.2.2.2.3EntrezGene:8084801UniProt:C5YTK8EnsemblPlants:EES16857ProteinID:EES16857ProteinID:EES16857.1
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045492
InterPro:IRX15/IRX15L/IGXMPFAM:PF04669PANTHER:PTHR31444PANTHER:PTHR31444:SF2InterPro:Polysacc_synth_domEnsemblPlantsGene:SORBI_3008G072600
unigene:Sbi.1448TIGRFAMs:TIGR01627TMHMM:TMhelixUniParc:UPI0001A88130RefSeq:XP_002443019.1SEG:seg
Description
hypothetical protein
Coordinates
chr8:-:9741629..9743233
Molecular Weight (calculated)
32352.9 Da
IEP (calculated)
6.788
GRAVY (calculated)
0.128
Length
303 amino acids
Sequence
(BLAST)
001: MSSPMHVRKA IHFASLRAKL AQQGKAGLAL RLLLAAALAG FLLVFAARTL LVSSPAAATS SLAECAAKGT AAATAGLPLA VMEALVHYTT SNVTPQQTAD
101: EIGVSLRVLQ RRAPCNFLVF GLGHDSPMWA ALNHGGRTVF LEEDASWIAS VRATHPSLES YHVAYDTVLT DADALLQLRD HPACVAQPDL ASAADASCRL
201: ALRGLPPVFH ELEWDLIMVD APTGWTPEAP GRMGAIYTAG MAARARRPGD GPTDVFVHDV DRPVEDAFSK AFLCEGYLAE QVGRIRHFVI PSHREKDGTP
301: FCP
Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)
001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR
Arabidopsis Description
GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.