Factsheet for VIT_12s0035g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	75.0	73.45
Solyc01g103360.2.1	Tomato	plasma membrane	70.42	72.73
PGSC0003DMT400064018	Potato	plasma membrane	70.07	72.1
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	70.07	70.57
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	69.01	69.75
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	68.66	69.39
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	68.31	69.04
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	66.2	67.14
KRH50678	Soybean	cytosol	16.2	64.79
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	64.44	61.0
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	58.1	59.14
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	50.7	57.14
TraesCS5D01G319700.1	Wheat	mitochondrion	55.99	53.36
TraesCS5A01G313000.1	Wheat	mitochondrion	55.63	52.84
TraesCS5B01G313900.1	Wheat	golgi, unclear	55.63	52.67
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	55.28	52.33
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	44.01	51.65
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	54.23	51.16
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	54.23	50.99
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	54.58	50.65
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	52.11	50.17
EES16857	Sorghum	mitochondrion	51.76	48.51
HORVU7Hr1G120340.1	Barley	plastid	54.23	43.14
VIT_14s0068g01970.t01	Wine grape	endoplasmic reticulum, plasma membrane	41.9	42.2
VIT_01s0010g03680.t01	Wine grape	endoplasmic reticulum, golgi	40.14	40.57
TraesCS4A01G227100.1	Wheat	mitochondrion	46.13	40.43
TraesCS4B01G089200.1	Wheat	mitochondrion	45.77	40.25
VIT_03s0063g00030.t01	Wine grape	plastid	30.99	40.0
KRH50677	Soybean	mitochondrion	15.49	40.0
TraesCS4D01G086700.1	Wheat	mitochondrion	45.77	39.88
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	45.77	36.72
EES08266	Sorghum	mitochondrion	40.49	35.06
Os11t0242600-00	Rice	mitochondrion	38.38	34.49
Zm00001d003239_P001	Maize	cytosol	19.01	32.34
VIT_07s0031g00110.t01	Wine grape	golgi	34.15	31.29

Protein Annotations

EntrezGene:100260885	wikigene:100260885	MapMan:21.2.2.2.3	EMBL:AM450650	ProteinID:CAN78768	ProteinID:CAN78768.1
ProteinID:CCB55030	ProteinID:CCB55030.1	UniProt:F6HK27	EMBL:FN595990	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	EntrezGene:LOC100260885
wikigene:LOC100260885	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF18	InterPro:Polysacc_synth_dom	TIGR:TC61216
TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI00015CC263	ArrayExpress:VIT_12s0035g01340	EnsemblPlantsGene:VIT_12s0035g01340	EnsemblPlants:VIT_12s0035g01340.t01
unigene:Vvi.14752	RefSeq:XP_002266046	RefSeq:XP_002266046.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:21195068..21196073

Molecular Weight (calculated)

32205.1 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.235

Length

284 amino acids

Sequence
(BLAST)

001: MRPKPHRLSN LKILIIGVFV AFLLLFVLRS SFSSSNSDAF LPKDSKIVIG RAENCSRTCG KIPPSLAQAL IHYTTSTITP QQTLKEIKVT SRVLQKKSPC
101: NFLVFGLGHD SLMWAALNHG GRTIFLDEDA VWIERIRRRF PMLESYHVTY DSKVNQADEL MEAGKRPECT AIVDARYSMC QLGLKGLPGE VYDIKWDLIM
201: VDAPTGYHDE APGRMTAIYT AGMMARNRAD GETDVFVHDV NRVVEDKFSK EFLCDGYMKK QEGRLRHFTI PSHRDGMERP FCPL

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.