Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 79.32 | 78.52 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 79.32 | 78.0 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 78.98 | 77.93 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 78.64 | 77.08 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 78.31 | 77.0 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 77.97 | 76.16 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 78.98 | 76.14 |
| EES16857 | Sorghum | mitochondrion | 77.63 | 75.58 |
| Zm00001d023950_P001 | Maize | mitochondrion | 75.93 | 72.49 |
| Zm00001d041782_P001 | Maize | plasma membrane | 72.88 | 72.15 |
| HORVU7Hr1G120340.1 | Barley | plastid | 78.98 | 65.27 |
| Zm00001d028737_P001 | Maize | golgi | 35.59 | 62.13 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 51.86 | 54.84 |
| VIT_12s0035g01340.t01 | Wine grape | golgi | 50.17 | 52.11 |
| Bra030789.1-P | Field mustard | endoplasmic reticulum, golgi | 49.49 | 51.96 |
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 49.49 | 51.96 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 49.15 | 51.6 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 49.15 | 51.42 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 50.85 | 51.02 |
| KRH50678 | Soybean | cytosol | 12.2 | 50.7 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 51.53 | 50.67 |
| Solyc01g103360.2.1 | Tomato | plasma membrane | 47.12 | 50.55 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 43.05 | 50.4 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 52.2 | 50.0 |
| VIT_12s0035g01170.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 48.14 | 48.97 |
| KRH06044 | Soybean | endoplasmic reticulum, golgi, vacuole | 46.1 | 48.57 |
| PGSC0003DMT400064018 | Potato | plasma membrane | 45.42 | 48.55 |
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 48.14 | 47.97 |
| Bra016131.1-P | Field mustard | endoplasmic reticulum, extracellular | 48.14 | 47.97 |
| AT4G09990.1 | Thale cress | golgi | 47.12 | 47.93 |
| Os11t0242600-00 | Rice | mitochondrion | 51.19 | 47.78 |
| Bra028013.1-P | Field mustard | golgi | 47.12 | 46.96 |
| CDX93751 | Canola | golgi | 47.12 | 46.96 |
| CDY15292 | Canola | golgi | 47.12 | 46.96 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 47.8 | 46.84 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 47.12 | 46.8 |
| CDY48797 | Canola | golgi, plasma membrane | 47.12 | 46.8 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 46.78 | 46.78 |
| KRH64803 | Soybean | golgi, plasma membrane | 48.47 | 46.73 |
| Bra034460.1-P | Field mustard | golgi, plasma membrane, vacuole | 46.78 | 46.46 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 41.36 | 46.21 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 34.58 | 42.15 |
| CDY37946 | Canola | extracellular | 37.63 | 41.89 |
| Os11t0490100-01 | Rice | plasma membrane | 38.31 | 37.42 |
| Zm00001d027968_P001 | Maize | cytosol, mitochondrion, plastid | 38.31 | 36.45 |
| KRH50677 | Soybean | mitochondrion | 12.88 | 34.55 |
| Os04t0649900-01 | Rice | mitochondrion | 35.93 | 33.33 |
| Os06t0687600-00 | Rice | golgi | 36.27 | 31.85 |
| Os02t0158500-00 | Rice | plastid | 35.59 | 26.79 |
| Os11t0488500-01 | Rice | cytosol, nucleus | 13.56 | 12.31 |
Protein Annotations
| MapMan:21.2.2.2.3 | EntrezGene:4351745 | ProteinID:ABA96114.1 | EMBL:AK069867 | ProteinID:BAF29397.1 | ProteinID:BAT16283.1 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | EnsemblPlantsGene:Os12g0204500 | EnsemblPlants:Os12t0204500-01 | PFAM:PF04669 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF2 |
| InterPro:Polysacc_synth_dom | UniProt:Q2QW75 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0000681843 | RefSeq:XP_015618186.1 |
| SEG:seg | : | : | : | : | : |
Description
Protein of unknown function DUF579, plant family protein. (Os12t0204500-01)
Coordinates
chr12:-:5455305..5456824
Molecular Weight (calculated)
31527.0 Da
IEP (calculated)
7.085
GRAVY (calculated)
0.177
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPMHVRKA IHFVSMKAKL QSFGGLRLLL VGCLAALLLL FAVRTLSFTT SSATATAARE AAEAGCGKLP AAVAQAMVHY ATANVTPQQT AAEIGVSLRV
101: LQLRAPCNFL VFGLGLDSAM WAALNHGGRT VFLEEDASWI ASVKAGHPGL ESYHVAYDTR VTDADELIAL RHEPACTSQP DLAAAAAASC RLALRGLPPV
201: FHEVEWDLIM VDAPTGWTPE SPGRMGAIYT AGMAARARTP GAGATEVFVH DVDRHVEDTF SKAFLCDGYL VEQVGRIRRF VIPSHRDKDG TPFCP
101: LQLRAPCNFL VFGLGLDSAM WAALNHGGRT VFLEEDASWI ASVKAGHPGL ESYHVAYDTR VTDADELIAL RHEPACTSQP DLAAAAAASC RLALRGLPPV
201: FHEVEWDLIM VDAPTGWTPE SPGRMGAIYT AGMAARARTP GAGATEVFVH DVDRHVEDTF SKAFLCDGYL VEQVGRIRRF VIPSHRDKDG TPFCP
001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
Arabidopsis Description
GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.