Factsheet for Solyc06g064800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi

Predictor Summary:

plastid 2
extracellular 5
golgi 5
plasma membrane 5
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G33800.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT1G33800.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	55.3	52.33
Solyc01g103360.2.1	Tomato	plasma membrane	53.41	51.27
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	56.44	50.68
Bra028013.1-P	Field mustard	golgi	54.17	48.31
CDX93751	Canola	golgi	54.17	48.31
CDY15292	Canola	golgi	54.17	48.31
CDY48797	Canola	golgi, plasma membrane	53.03	47.14
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	53.41	47.0
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	52.65	46.8
KRH64803	Soybean	golgi, plasma membrane	54.17	46.73
AT1G33800.1	Thale cress	golgi, plasma membrane	52.27	46.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	44.32	46.43
Solyc11g020540.1.1	Tomato	cytosol	11.74	46.27
AT4G09990.1	Thale cress	golgi	48.48	44.14
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	49.24	44.07
CDX96332	Canola	endoplasmic reticulum, extracellular	48.86	43.58
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	48.86	43.58
TraesCS5D01G319700.1	Wheat	mitochondrion	47.73	42.28
CDX72815	Canola	endoplasmic reticulum, extracellular	48.11	42.19
TraesCS5A01G313000.1	Wheat	mitochondrion	47.73	42.14
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	47.73	42.0
TraesCS5B01G313900.1	Wheat	golgi, unclear	47.73	42.0
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	47.35	41.53
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	47.35	41.39
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	46.21	41.36
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	47.73	41.18
EES16857	Sorghum	mitochondrion	46.21	40.26
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	35.98	39.26
CDY37946	Canola	extracellular	37.12	36.98
Solyc07g015920.1.1	Tomato	extracellular	37.88	36.36
TraesCS4A01G227100.1	Wheat	mitochondrion	42.42	34.57
TraesCS4D01G086700.1	Wheat	mitochondrion	42.42	34.36
TraesCS4B01G089200.1	Wheat	mitochondrion	41.67	34.06
HORVU7Hr1G120340.1	Barley	plastid	45.83	33.89
Solyc11g020470.1.1	Tomato	cytosol	18.18	31.79
Os11t0242600-00	Rice	mitochondrion	37.88	31.65
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	42.05	31.36
EES08266	Sorghum	mitochondrion	35.98	28.96
Solyc02g093090.1.1	Tomato	extracellular, nucleus	32.95	28.25
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	30.68	25.8
Solyc03g110890.1.1	Tomato	plasma membrane, vacuole	28.41	24.92

Protein Annotations

MapMan:21.2.2.2.3	ncoils:Coil	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	UniProt:K4C7B0	PFAM:PF04669	PANTHER:PTHR31444
PANTHER:PTHR31444:SF2	InterPro:Polysacc_synth_dom	EnsemblPlantsGene:Solyc06g064800.1	EnsemblPlants:Solyc06g064800.1.1	TIGRFAMs:TIGR01627	TMHMM:TMhelix
UniParc:UPI00027670E0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:40380223..40381017

Molecular Weight (calculated)

30462.1 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.179

Length

264 amino acids

Sequence
(BLAST)

001: MILNKLILSC IFFIFLLYLI LRANSPSFKL KNLSISSCNK IPPSLAESIL HYATTNKTIQ QKHEEISITL KVLEKKSPCN FLVFGLGLDS LMWSSLNHNG
101: RTVFIEENIH WIQKITKEVP SLEAYHYIYD TRLDQAPELL SIGKREDSCK KNLGDPRNSK CPLALTNMPK EVYEIEWDLI MIDAPTGSFY NLPGRMKVIY
201: TVGLLARNRE NGETDVFVHD CKRYVEDQFS RNFLCEGYIR GQVRNLRHFT IPSYRSGLVK SFCP

Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)

001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR

Arabidopsis Description

GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.