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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 3
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96332 Canola endoplasmic reticulum, extracellular 93.02 94.59
CDY37946 Canola extracellular 70.1 79.62
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 76.74 78.31
CDX93751 Canola golgi 54.49 55.41
CDY15292 Canola golgi 54.49 55.41
CDY48797 Canola golgi, plasma membrane 54.15 54.88
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 50.83 54.45
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 50.83 54.45
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 53.16 54.42
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 54.15 54.33
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 49.83 53.76
KRH64803 Soybean golgi, plasma membrane 54.15 53.27
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 53.49 52.27
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 43.52 51.98
TraesCS5A01G313000.1 Wheat mitochondrion 50.5 50.84
TraesCS5D01G319700.1 Wheat mitochondrion 49.83 50.34
TraesCS5B01G313900.1 Wheat golgi, unclear 49.83 50.0
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 49.83 50.0
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 50.17 50.0
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 49.83 49.83
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 50.17 49.35
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 39.2 48.76
Solyc06g064800.1.1 Tomato extracellular, golgi 42.19 48.11
Os12t0204500-01 Rice endoplasmic reticulum, golgi 46.84 47.8
EES16857 Sorghum mitochondrion 47.84 47.52
TraesCS4B01G089200.1 Wheat mitochondrion 44.52 41.49
HORVU7Hr1G120340.1 Barley plastid 49.17 41.46
TraesCS4A01G227100.1 Wheat mitochondrion 44.19 41.05
TraesCS4D01G086700.1 Wheat mitochondrion 43.85 40.49
CDY12639 Canola endoplasmic reticulum, golgi 36.54 38.19
CDY28894 Canola endoplasmic reticulum, golgi 36.88 38.14
CDY07428 Canola endoplasmic reticulum, golgi 36.54 37.8
CDX84898 Canola endoplasmic reticulum 36.21 37.72
CDY27638 Canola endoplasmic reticulum 36.21 37.72
CDY51186 Canola endoplasmic reticulum, plasma membrane 36.21 36.95
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 42.86 36.44
Os11t0242600-00 Rice mitochondrion 36.54 34.81
EES08266 Sorghum mitochondrion 37.54 34.45
CDY12819 Canola golgi, mitochondrion, plasma membrane, plastid 32.23 30.79
CDY01429 Canola golgi, mitochondrion, plasma membrane, plastid 31.89 30.48
CDX81329 Canola plastid 30.9 30.19
CDY13145 Canola plastid 32.23 29.57
CDY37228 Canola plastid 31.56 29.41
CDX89660 Canola plastid 32.23 29.31
CDY62313 Canola plastid 30.9 29.06
CDY30600 Canola endoplasmic reticulum, golgi 30.9 28.7
CDY17753 Canola endoplasmic reticulum, golgi 30.9 28.7
CDY03407 Canola plastid 26.58 25.72
CDY34323 Canola plastid 26.25 25.57
CDX92660 Canola plastid 24.58 23.72
Protein Annotations
EnsemblPlants:CDX72815EnsemblPlantsGene:GSBRNA2T00103204001GO:A0A078C7M5GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444
PANTHER:PTHR31444:SF18PFAM:PF04669ProteinID:CDX72815ProteinID:CDX72815.1SEG:segTIGRFAMs:TIGR01627
TMHMM:TMhelixUniParc:UPI0004EEC8B0MapMan:21.2.2.2.3:::
Description
BnaC06g32630D
Coordinates
chrLK031797:+:393389..394549
Molecular Weight (calculated)
33472.1 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.165
Length
301 amino acids
Sequence
(BLAST)
001: MTTNLHFPIT LKLILSTLAS LLVITLFFIT RTDFSPSSYQ SAPAKTIQIS SSSTRTKEQS PDSVSCGKIP PSLADALIHY AASNVTPQQT LSEISVTKKV
101: LDKTSPCNFL VFGLGHDSLM WASLNHGGRT IFLDEDESWI RQIAEKFPSL ESYHVRYETK LRDAAALMSA ARNREECRLG ASMDLRVSKC ELALKGLPEV
201: VYEMEWNLIM VDAPTGFHEE APGRMSAIYT AGMIARSRGK GETTAVFVHD VDRTVEDEFS MAFLCRDYMT EQEGRLRHFT VPSHWDSNIA GGTVPNPPMI
301: K
Best Arabidopsis Sequence Match ( AT1G71690.1 )
(BLAST)
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
Arabidopsis Description
At1g71690 [Source:UniProtKB/TrEMBL;Acc:Q9C9J1]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.