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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:
  • plastid 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plastid
Any Predictor:endoplasmic reticulum, plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 HORVU2Hr1G084420.1 AT1G27300.1 21798944
AT1G33800.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
AT1G33800.1 HORVU2Hr1G081800.3 AT4G26455.1 21798944
AT1G33800.1 HORVU5Hr1G071910.1 AT4G26455.1 21798944
AT1G33800.1 HORVU7Hr1G048940.3 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G227100.1 Wheat mitochondrion 85.59 93.52
TraesCS4B01G089200.1 Wheat mitochondrion 84.75 92.88
TraesCS4D01G086700.1 Wheat mitochondrion 85.31 92.64
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 51.41 60.67
Os11t0242600-00 Rice mitochondrion 53.11 59.49
EES08266 Sorghum mitochondrion 53.11 57.32
Zm00001d007269_P001 Maize mitochondrion, plastid 50.85 55.05
HORVU7Hr1G120340.1 Barley plastid 51.13 50.7
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 39.55 50.18
KRH50678 Soybean cytosol 9.6 47.89
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 37.57 47.16
AT1G33800.1 Thale cress golgi, plasma membrane 39.27 46.8
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 37.01 46.79
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 37.01 46.62
AT4G09990.1 Thale cress golgi 38.14 46.55
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 36.72 46.26
Solyc01g103360.2.1 Tomato plasma membrane 35.88 46.18
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 36.44 45.91
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 38.42 45.79
VIT_12s0035g01340.t01 Wine grape golgi 36.72 45.77
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 37.29 45.52
CDY48797 Canola golgi, plasma membrane 38.14 45.45
CDX93751 Canola golgi 37.85 45.27
Bra028013.1-P Field mustard golgi 37.85 45.27
CDY15292 Canola golgi 37.85 45.27
PGSC0003DMT400064018 Potato plasma membrane 34.75 44.57
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 37.01 44.56
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 37.01 43.67
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 31.07 43.65
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 36.44 43.58
CDX96332 Canola endoplasmic reticulum, extracellular 36.44 43.58
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 35.88 43.05
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 37.29 42.86
CDX72815 Canola endoplasmic reticulum, extracellular 36.44 42.86
Solyc06g064800.1.1 Tomato extracellular, golgi 31.36 42.05
KRH64803 Soybean golgi, plasma membrane 35.31 40.85
HORVU0Hr1G015370.1 Barley cytosol, extracellular 26.84 39.75
CDY37946 Canola extracellular 29.1 38.87
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 25.42 37.19
HORVU3Hr1G108120.1 Barley extracellular, plasma membrane, vacuole 30.23 36.64
HORVU2Hr1G113560.1 Barley golgi, plasma membrane 29.94 35.22
KRH50677 Soybean mitochondrion 10.73 34.55
HORVU7Hr1G100750.3 Barley endoplasmic reticulum 32.2 33.63
HORVU2Hr1G089430.1 Barley endoplasmic reticulum, peroxisome, plastid 29.66 30.88
Protein Annotations
EnsemblPlants:HORVU4Hr1G015310.3EnsemblPlantsGene:HORVU4Hr1G015310GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0045492InterPro:IRX15/IRX15L/IGXM
InterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF5PFAM:PF04669SEG:segTIGRFAMs:TIGR01627
TMHMM:TMhelixUniParc:UPI000B47E018UniProt:A0A287NCG3MapMan:21.2.2.2.3::
Description
No Description!
Coordinates
chrchr4H:-:58635662..58642030
Molecular Weight (calculated)
37794.3 Da
IEP (calculated)
8.102
GRAVY (calculated)
-0.118
Length
354 amino acids
Sequence
(BLAST)
001: LLTPHHTTPN QTIVIFHCIA ESVTQHTAYT MTSPTLARKA KLKNHLVTAK AKLRQHVTLR RIVLVTATSA AGFILLLTVR TLSASHARSP GAAASTTSPP
101: ESVRRNTQQQ QQGGCAKLPG PVGEALVHYA TTNATLRQTA PEVAVTARLL AQRAPCNLLV FGGLGPDSAL WAALNHGGRT AFLEEDAALI AEVGARHPGL
201: GLESHQVAYQ TTLADADELL GLRGSPDCTA SPPKGRPLSP DNFEGSPCKL AMRGLPAAFY ETEWDVIIVD APTGWVPEAP GRIGGAIYMA GMAARARRPG
301: NGETDVLVHD VDMPVEDSFS RAFLCAGYLE EEVGRLRRFA IPSHREKEGM PFCP
Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)
001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR
Arabidopsis Description
GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.