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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 3
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 99.66 99.66
CDX72815 Canola endoplasmic reticulum, extracellular 94.59 93.02
CDY37946 Canola extracellular 71.96 80.38
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 78.72 78.98
CDX93751 Canola golgi 56.42 56.42
CDY15292 Canola golgi 56.42 56.42
CDY48797 Canola golgi, plasma membrane 56.08 55.89
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 52.03 55.2
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 52.36 55.16
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 55.74 55.0
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 52.03 54.8
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 54.39 54.76
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 45.61 53.57
KRH64803 Soybean golgi, plasma membrane 55.07 53.27
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 54.73 52.6
TraesCS5A01G313000.1 Wheat mitochondrion 51.35 50.84
TraesCS5D01G319700.1 Wheat mitochondrion 50.68 50.34
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 50.68 50.0
TraesCS5B01G313900.1 Wheat golgi, unclear 50.68 50.0
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 51.01 50.0
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 40.88 50.0
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 50.68 49.83
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 51.01 49.35
Solyc06g064800.1.1 Tomato extracellular, golgi 43.58 48.86
Os12t0204500-01 Rice endoplasmic reticulum, golgi 47.97 48.14
EES16857 Sorghum mitochondrion 48.65 47.52
HORVU7Hr1G120340.1 Barley plastid 50.68 42.02
TraesCS4B01G089200.1 Wheat mitochondrion 45.27 41.49
TraesCS4A01G227100.1 Wheat mitochondrion 44.93 41.05
TraesCS4D01G086700.1 Wheat mitochondrion 44.59 40.49
CDY12639 Canola endoplasmic reticulum, golgi 37.84 38.89
CDY28894 Canola endoplasmic reticulum, golgi 37.84 38.49
CDY07428 Canola endoplasmic reticulum, golgi 37.5 38.14
CDY27638 Canola endoplasmic reticulum 37.16 38.06
CDX84898 Canola endoplasmic reticulum 37.16 38.06
CDY51186 Canola endoplasmic reticulum, plasma membrane 37.5 37.63
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 43.58 36.44
Os11t0242600-00 Rice mitochondrion 37.84 35.44
EES08266 Sorghum mitochondrion 38.51 34.76
CDX81329 Canola plastid 33.45 32.14
CDY12819 Canola golgi, mitochondrion, plasma membrane, plastid 34.12 32.06
CDY01429 Canola golgi, mitochondrion, plasma membrane, plastid 33.78 31.75
CDY13145 Canola plastid 34.46 31.1
CDY37228 Canola plastid 33.78 30.96
CDY62313 Canola plastid 33.45 30.94
CDX89660 Canola plastid 34.46 30.82
CDY17753 Canola endoplasmic reticulum, golgi 32.77 29.94
CDY30600 Canola endoplasmic reticulum, golgi 32.77 29.94
CDY03407 Canola plastid 28.04 26.69
CDY34323 Canola plastid 27.7 26.54
CDX92660 Canola plastid 25.68 24.36
Protein Annotations
EnsemblPlants:CDX96332EnsemblPlantsGene:GSBRNA2T00102482001GO:A0A078E5G3GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444
PANTHER:PTHR31444:SF18PFAM:PF04669ProteinID:CDX96332ProteinID:CDX96332.1SEG:segTIGRFAMs:TIGR01627
TMHMM:TMhelixUniParc:UPI0004EDB3B9MapMan:21.2.2.2.3:::
Description
BnaA07g29430D
Coordinates
chrLK031894:+:327109..328254
Molecular Weight (calculated)
33079.5 Da
IEP (calculated)
6.785
GRAVY (calculated)
-0.194
Length
296 amino acids
Sequence
(BLAST)
001: MTTNLHFPIT LKLILSTLAS LLVITLFFIT RTDFSPSSYQ PAPAKTIQIS SSSTRTKVQS QNSVSCGKIP PSLADALIHY AASNVTPQQT LSEISVTKKV
101: LDKTSPCNFL VFGLGHDSLM WASLNHGGRT IFLDEDESWI RRIAEKFPSL ESYHVRYETK VRDAAALMSA ARDREECRLG ASMDLRVSKC ELALKGLPEV
201: VYEREWDLIM VDAPTGFHED APGRMSAIYT AGMLARSRKN GETTAVFVHD VDRTVEDEFS MAFLCRDYMT EQEGRLRHFT VPSHWDSNIA GGKYCP
Best Arabidopsis Sequence Match ( AT1G71690.1 )
(BLAST)
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
Arabidopsis Description
At1g71690 [Source:UniProtKB/TrEMBL;Acc:Q9C9J1]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.