Factsheet for TraesCS4D01G086700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G089200.1	Wheat	mitochondrion	96.93	97.83
TraesCS4A01G227100.1	Wheat	mitochondrion	96.63	97.22
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	92.64	85.31
TraesCS5D01G319700.1	Wheat	mitochondrion	57.36	62.75
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	57.98	61.76
Os11t0242600-00	Rice	mitochondrion	57.67	59.49
EES08266	Sorghum	mitochondrion	59.2	58.84
Zm00001d007269_P001	Maize	mitochondrion, plastid	57.36	57.19
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	42.94	50.18
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	40.49	47.14
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	40.49	46.81
AT1G33800.1	Thale cress	golgi, plasma membrane	42.64	46.8
Solyc01g103360.2.1	Tomato	plasma membrane	39.26	46.55
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	39.88	46.26
AT4G09990.1	Thale cress	golgi	41.1	46.21
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	39.57	45.91
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	39.57	45.91
VIT_12s0035g01340.t01	Wine grape	golgi	39.88	45.77
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	40.49	45.52
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	41.41	45.45
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	40.8	45.24
CDY48797	Canola	golgi, plasma membrane	41.1	45.12
KRH50678	Soybean	cytosol	9.82	45.07
CDY15292	Canola	golgi	40.8	44.93
Bra028013.1-P	Field mustard	golgi	40.8	44.93
CDX93751	Canola	golgi	40.8	44.93
PGSC0003DMT400064018	Potato	plasma membrane	38.04	44.93
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	34.66	44.84
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	40.49	44.59
CDX96332	Canola	endoplasmic reticulum, extracellular	40.49	44.59
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	40.8	44.33
CDX72815	Canola	endoplasmic reticulum, extracellular	40.49	43.85
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	39.26	43.39
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	40.8	43.18
Solyc06g064800.1.1	Tomato	extracellular, golgi	34.36	42.42
KRH64803	Soybean	golgi, plasma membrane	38.65	41.18
CDY37946	Canola	extracellular	31.9	39.25
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	28.53	38.43
TraesCS3D01G492500.1	Wheat	extracellular	34.36	38.36
TraesCS2D01G377700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	33.13	36.61
TraesCS2D01G513800.1	Wheat	golgi, plastid	33.13	34.18
KRH50677	Soybean	mitochondrion	11.35	33.64
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	34.36	33.04
TraesCS1D01G370900.1	Wheat	extracellular, plasma membrane	26.69	32.34
TraesCS6D01G121700.1	Wheat	mitochondrion	31.9	31.8

Protein Annotations

EnsemblPlants:TraesCS4D01G086700.1	EnsemblPlantsGene:TraesCS4D01G086700	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF5
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:21.2.2.2.3	:

Description

No Description!

Coordinates

chr4D:+:62096216..62097196

Molecular Weight (calculated)

34767.6 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.152

Length

326 amino acids

Sequence
(BLAST)

001: MTSPTLARKA KLKNHLVSAK AKLRQHVTLR RIVLVAAASA AAFILLLTVR TLSASHARSP GAASSTTSPP EAVRRNTQQQ QQQQGGCAKL PGPVAEALVH
101: YATANATLPQ TAAEVGVTAR LLARRAPCNL LVFGGLGPDS ALWAALNHGG RTAFFEEDAA LIAEVGARHP GLGLESHQVA YQTTLADADE LLGLRGSPDC
201: TASPPKDHPF SPDHFEGSPC KLAMRGLPAA FYETEWDVIM VDAPTGWVPE APGRIGGAIY MTGMAARARR PGNGETEVLV HDVDRTVEDS FSRAFLCAGY
301: LEEEVGRLRR FAIPSHREKE GMPFCP

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.