CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
vacuole 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES02290
EES05123
EES14314
EES19830
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	EES05123	AT1G27300.1	21798944
AT1G33800.1	EES02290	AT3G16310.1	21798944
AT1G33800.1	EES19830	AT3G16310.1	21798944
AT1G33800.1	EER96942	AT4G26455.1	21798944
AT1G33800.1	EES14314	AT4G26455.1	21798944
AT1G33800.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007269_P001	Maize	mitochondrion, plastid	83.84	84.1
Os11t0242600-00	Rice	mitochondrion	57.62	59.81
TraesCS4D01G086700.1	Wheat	mitochondrion	58.84	59.2
TraesCS4B01G089200.1	Wheat	mitochondrion	58.23	59.13
TraesCS4A01G227100.1	Wheat	mitochondrion	58.23	58.95
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	57.32	53.11
EES16857	Sorghum	mitochondrion	48.48	52.48
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	39.02	45.88
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	35.37	41.43
KRH50678	Soybean	cytosol	8.84	40.85
CDX93751	Canola	golgi	36.59	40.54
Bra028013.1-P	Field mustard	golgi	36.59	40.54
CDY15292	Canola	golgi	36.59	40.54
VIT_12s0035g01340.t01	Wine grape	golgi	35.06	40.49
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	34.76	40.43
Solyc01g103360.2.1	Tomato	plasma membrane	33.84	40.36
AT4G09990.1	Thale cress	golgi	35.67	40.34
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	34.45	40.21
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	30.79	40.08
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	35.37	40.0
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	34.15	39.86
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	34.15	39.86
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	35.67	39.39
CDY48797	Canola	golgi, plasma membrane	35.67	39.39
AT1G33800.1	Thale cress	golgi, plasma membrane	35.67	39.39
PGSC0003DMT400064018	Potato	plasma membrane	32.93	39.13
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	34.76	38.78
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	34.76	38.51
CDX96332	Canola	endoplasmic reticulum, extracellular	34.76	38.51
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	34.76	38.0
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	35.67	37.99
CDX72815	Canola	endoplasmic reticulum, extracellular	34.45	37.54
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	33.54	37.29
Solyc06g064800.1.1	Tomato	extracellular, golgi	28.96	35.98
KRH64803	Soybean	golgi, plasma membrane	33.23	35.62
CDY37946	Canola	extracellular	27.44	33.96
EER88850	Sorghum	plastid	32.32	31.93
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	22.56	30.58
OQU84413	Sorghum	golgi, mitochondrion	29.57	30.31
KXG27192	Sorghum	golgi, mitochondrion, plastid	28.96	29.05
OQU82596	Sorghum	plastid	25.0	27.7
KRH50677	Soybean	mitochondrion	9.15	27.27

Protein Annotations

MapMan:35.1	EntrezGene:8057154	UniProt:C5Y7U4	ncoils:Coil	EnsemblPlants:EES08266	ProteinID:EES08266
ProteinID:EES08266.1	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF5	InterPro:Polysacc_synth_dom
EnsemblPlantsGene:SORBI_3005G087200	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI0001A86649	RefSeq:XP_002449278.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:12289843..12290946

Molecular Weight (calculated)

34584.0 Da

IEP (calculated)

7.483

GRAVY (calculated)

-0.132

Length

328 amino acids

Sequence
(BLAST)

001: MTSPMHARKA KLKTHLISAK AKLKHNVTPR RVVLLAAAAT SAFLLLFTLR TLHSAASRHG AAAGAPAIAA HHADDHQELE HQQQHQQQEC AAAKQVPASV
101: AEALVHYATS NETPPRQTEA EAGAAARVLA RRAPCSLLVF GLGPGSALWA ALNHGGRTLF LEADADRIAS ARAARPAGID LQAHPVAFQQ EAIATPSDDL
201: LVALRNSSDC AAAASSSPPK PLTPDHLEQS PCALAPRGLP AAFYEAEWDV IVVDAPVPGA VYTAGVAARA RRPGTGETDV LVHGVDGAAD ESFTRAFLCE
301: GYLKEEAGRL RHFSIPSHRD KDAMPFCP

Best Arabidopsis Sequence Match ( AT4G09990.1 )
(BLAST)

001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF

Arabidopsis Description

GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.