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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • nucleus 3
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400006495
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 PGSC0003DMT400084737 AT1G27300.1 21798944
AT1G33800.1 PGSC0003DMT400006495 AT3G16310.1 21798944
AT1G33800.1 PGSC0003DMT400022426 AT4G26455.1 21798944
AT1G33800.1 PGSC0003DMT400056956 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 87.66 91.84
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 66.56 68.33
KRH64803 Soybean golgi, plasma membrane 64.61 65.03
CDY48797 Canola golgi, plasma membrane 58.77 60.94
Bra028013.1-P Field mustard golgi 58.44 60.81
CDX93751 Canola golgi 58.44 60.81
CDY15292 Canola golgi 58.44 60.81
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 58.44 60.61
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 46.75 59.5
AT1G33800.1 Thale cress golgi, plasma membrane 57.14 59.26
AT4G09990.1 Thale cress golgi 55.52 58.97
PGSC0003DMT400064018 Potato plasma membrane 51.95 57.97
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 52.27 57.71
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 47.08 57.54
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 53.57 55.93
TraesCS5D01G319700.1 Wheat mitochondrion 53.57 55.37
TraesCS5A01G313000.1 Wheat mitochondrion 53.57 55.18
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 52.6 54.73
CDX96332 Canola endoplasmic reticulum, extracellular 52.6 54.73
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 53.25 54.67
TraesCS5B01G313900.1 Wheat golgi, unclear 53.25 54.67
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 52.92 54.15
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 52.92 53.97
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 53.25 53.59
CDX72815 Canola endoplasmic reticulum, extracellular 52.27 53.49
Os12t0204500-01 Rice endoplasmic reticulum, golgi 50.0 52.2
EES16857 Sorghum mitochondrion 51.3 52.15
CDY37946 Canola extracellular 40.58 47.17
HORVU7Hr1G120340.1 Barley plastid 52.92 45.66
TraesCS4A01G227100.1 Wheat mitochondrion 43.51 41.36
TraesCS4B01G089200.1 Wheat mitochondrion 43.18 41.18
TraesCS4D01G086700.1 Wheat mitochondrion 43.18 40.8
PGSC0003DMT400084744 Potato endoplasmic reticulum 37.34 40.78
PGSC0003DMT400077009 Potato extracellular 35.71 40.0
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 42.86 37.29
Os11t0242600-00 Rice mitochondrion 37.34 36.39
EES08266 Sorghum mitochondrion 37.99 35.67
PGSC0003DMT400065494 Potato golgi, plasma membrane, plastid 32.14 32.78
PGSC0003DMT400064322 Potato plastid 32.14 32.14
PGSC0003DMT400039556 Potato golgi 26.62 30.48
PGSC0003DMT400066571 Potato endoplasmic reticulum, golgi, mitochondrion, plastid 29.22 28.66
Protein Annotations
EnsemblPlants:PGSC0003DMT400080082EnsemblPlantsGene:PGSC0003DMG400031183EntrezGene:102603322GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444
PANTHER:PTHR31444:SF2PFAM:PF04669PGSC:PGSC0003DMG400031183RefSeq:XP_006339353.1SEG:segTIGRFAMs:TIGR01627
TMHMM:TMhelixUniParc:UPI000295063EUniProt:M1D2Z0MapMan:21.2.2.2.3::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400031183]
Coordinates
chr11:-:16586396..16587611
Molecular Weight (calculated)
34521.8 Da
IEP (calculated)
5.563
GRAVY (calculated)
-0.319
Length
308 amino acids
Sequence
(BLAST)
001: MRSKSQSPIN VKLILIGIFL VFLLFWVLRS TYSPSPEQQT QSLDHSSVVS KSSSEDQETD EDHQSSSPSS STSSSVACPS NTCNKISPSL ANALVHYATS
101: NVTPQQTLKE ISVSLRVLEK KSPCNFLVFG LGHDSLMWTA LNHGGRTVFL EEDKSWIEQI QSQLPNLESY HVIYDTRITQ ADELMEIGMS NEDCKKVTDP
201: RFSKCQLALK GLPQQVLEID WDLIMVDAPT GWHDGAPGRM SAIYTAGLIA RNKLDGETDV FVHDVDRIVE DQFSKAFLCE SYLVEQEGRI RHFNIPSHRS
301: RLGRPFCP
Best Arabidopsis Sequence Match ( AT4G09990.1 )
(BLAST)
001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF
Arabidopsis Description
GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.