Factsheet for TraesCS7A01G560100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	96.36	96.68
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	96.36	95.1
TraesCS5A01G313000.1	Wheat	mitochondrion	88.41	89.3
HORVU7Hr1G120340.1	Barley	plastid	93.05	78.71
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	76.16	77.97
EES16857	Sorghum	mitochondrion	76.82	76.57
Zm00001d023950_P001	Maize	mitochondrion	76.49	74.76
Zm00001d041782_P001	Maize	plasma membrane	73.51	74.5
Zm00001d028737_P001	Maize	golgi	38.41	68.64
TraesCS4A01G227100.1	Wheat	mitochondrion	62.25	58.02
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	53.31	57.71
VIT_12s0035g01340.t01	Wine grape	golgi	50.99	54.23
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	51.99	53.4
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	49.67	53.19
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	49.34	53.02
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	53.97	52.92
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	49.01	52.67
Solyc01g103360.2.1	Tomato	plasma membrane	47.68	52.36
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	48.68	52.31
KRH50678	Soybean	cytosol	12.25	52.11
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	51.66	52.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	43.38	51.98
CDY48797	Canola	golgi, plasma membrane	50.33	51.18
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	49.01	51.03
AT4G09990.1	Thale cress	golgi	49.01	51.03
CDX93751	Canola	golgi	50.0	51.01
CDX96332	Canola	endoplasmic reticulum, extracellular	50.0	51.01
CDY15292	Canola	golgi	50.0	51.01
Bra028013.1-P	Field mustard	golgi	50.0	51.01
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	51.01
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	49.67	50.85
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	50.0	50.84
PGSC0003DMT400064018	Potato	plasma membrane	46.36	50.72
AT1G33800.1	Thale cress	golgi, plasma membrane	49.34	50.17
CDX72815	Canola	endoplasmic reticulum, extracellular	50.0	50.17
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	46.36	50.0
KRH64803	Soybean	golgi, plasma membrane	48.01	47.39
Solyc06g064800.1.1	Tomato	extracellular, golgi	41.39	47.35
CDY37946	Canola	extracellular	40.07	45.66
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	33.77	42.15
TraesCS2A01G381200.1	Wheat	extracellular	40.07	41.02
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	40.4	39.35
KRH50677	Soybean	mitochondrion	13.24	36.36
TraesCS2A01G512400.1	Wheat	golgi	37.42	35.76
TraesCS1A01G365400.1	Wheat	golgi	31.79	34.78
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	38.74	34.31
TraesCS6A01G131900.1	Wheat	mitochondrion	36.09	33.23

Protein Annotations

EnsemblPlants:TraesCS7A01G560100.1	EnsemblPlantsGene:TraesCS7A01G560100	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:21.2.2.2.3	:

Description

No Description!

Coordinates

chr7A:+:731962425..731963333

Molecular Weight (calculated)

32435.9 Da

IEP (calculated)

7.388

GRAVY (calculated)

0.088

Length

302 amino acids

Sequence
(BLAST)

001: MSMSSPVHAR KALHLVAMKA KLQSFLGLRL LVVAALAAFL LLFSARTLFS SSSSPGSAAS SHLHLSGDGS CSKLPAPVAD ALVHYATSNS TPQQTAAEIG
101: VSLRVLQRRS PCNFLVFGLG LDSPMWAALN HGGRTVFLEE DASWIASVRA KHPGLESYHV VYDTRLTEAD DLIALRDHPG CTAQPDLAAA AEASCRLALR
201: GLPAAFHEVE WDLVMVDAPT GWVPEAPGRM GAIYTAGMVA RARRPGDGAT DVFVHDVDRT VEDRFSKAFL CEAYLAEQVG RIRHFVIPSH REKPGTPFCP
301: LS

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.