Factsheet for TraesCS7D01G549800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	95.1	96.36
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	92.81	94.35
TraesCS5D01G319700.1	Wheat	mitochondrion	90.2	92.62
HORVU7Hr1G120340.1	Barley	plastid	92.16	78.99
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	76.14	78.98
EES16857	Sorghum	mitochondrion	74.84	75.58
Zm00001d023950_P001	Maize	mitochondrion	75.82	75.08
Zm00001d041782_P001	Maize	plasma membrane	72.22	74.16
Zm00001d028737_P001	Maize	golgi	37.91	68.64
TraesCS4D01G086700.1	Wheat	mitochondrion	61.76	57.98
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	52.61	57.71
VIT_12s0035g01340.t01	Wine grape	golgi	50.65	54.58
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	51.63	53.74
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	53.59	53.25
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	48.37	52.48
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	48.04	52.31
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	48.04	52.31
KRH50678	Soybean	cytosol	12.09	52.11
Solyc01g103360.2.1	Tomato	plasma membrane	46.73	52.0
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	47.71	51.96
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	50.65	51.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	42.48	51.59
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	48.37	51.03
AT4G09990.1	Thale cress	golgi	48.37	51.03
CDX96332	Canola	endoplasmic reticulum, extracellular	49.35	51.01
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	49.35	51.01
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	49.02	50.85
CDY48797	Canola	golgi, plasma membrane	49.35	50.84
CDX93751	Canola	golgi	49.02	50.68
CDY15292	Canola	golgi	49.02	50.68
Bra028013.1-P	Field mustard	golgi	49.02	50.68
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	49.02	50.51
PGSC0003DMT400064018	Potato	plasma membrane	45.42	50.36
CDX72815	Canola	endoplasmic reticulum, extracellular	49.35	50.17
AT1G33800.1	Thale cress	golgi, plasma membrane	48.37	49.83
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	45.42	49.64
KRH64803	Soybean	golgi, plasma membrane	48.04	48.04
Solyc06g064800.1.1	Tomato	extracellular, golgi	41.18	47.73
CDY37946	Canola	extracellular	40.2	46.42
TraesCS3D01G492500.1	Wheat	extracellular	41.5	43.49
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	33.66	42.56
TraesCS2D01G377700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	40.2	41.69
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	40.2	39.68
KRH50677	Soybean	mitochondrion	13.07	36.36
TraesCS2D01G513800.1	Wheat	golgi, plastid	36.93	35.76
TraesCS1D01G370900.1	Wheat	extracellular, plasma membrane	30.07	34.2
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	36.6	33.04
TraesCS6D01G121700.1	Wheat	mitochondrion	35.29	33.03

Protein Annotations

EnsemblPlants:TraesCS7D01G549800.1	EnsemblPlantsGene:TraesCS7D01G549800	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:21.2.2.2.3	:

Description

No Description!

Coordinates

chr7D:-:634411229..634412149

Molecular Weight (calculated)

32953.4 Da

IEP (calculated)

7.359

GRAVY (calculated)

0.013

Length

306 amino acids

Sequence
(BLAST)

001: MSMSSPVHAR KALHLVAMKA KLQSFLGLRL LLVAALAAFL LLFSARTLFS SSSSPGQRSA ASQLHLSGAG DDGSCSKLPA PVADALVHYA TSNTTPQQTA
101: AEIGVSLRVL QRRSPCNFLV FGLGLDSPMW AALNHGGRTV FLEEDASWIA SVRSKHPGLE SYHVVYDTRL TEADELIALR DHPGCTAQPD LAAAAEASCR
201: LALRGLPAAF HEVEWDLVMV DAPTGWVPEA PGRMGAIYTA GMVARARRPG DGATDVFVHD VDRTVEDRFS KAFLCDAYLA EQVGRIRHFV IPSHREKPGT
301: PFCPQN

Best Arabidopsis Sequence Match ( AT4G09990.1 )
(BLAST)

001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF

Arabidopsis Description

GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.