Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 80.38 | 71.96 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 79.62 | 70.1 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 72.83 | 65.42 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 44.53 | 46.83 |
| CDX93751 | Canola | golgi | 49.06 | 43.92 |
| CDY15292 | Canola | golgi | 49.06 | 43.92 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 46.04 | 43.73 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 49.06 | 43.33 |
| KRH64803 | Soybean | golgi, plasma membrane | 49.81 | 43.14 |
| CDY48797 | Canola | golgi, plasma membrane | 48.3 | 43.1 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 47.17 | 42.52 |
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 44.91 | 42.35 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 44.91 | 42.35 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 47.17 | 40.58 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 46.42 | 40.2 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 45.28 | 40.13 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 45.66 | 40.07 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 45.28 | 40.0 |
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 44.53 | 39.6 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 44.53 | 39.33 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 44.53 | 39.2 |
| Os12t0204500-01 | Rice | endoplasmic reticulum, golgi | 41.89 | 37.63 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 34.34 | 37.6 |
| EES16857 | Sorghum | mitochondrion | 42.64 | 37.29 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 36.98 | 37.12 |
| TraesCS4B01G089200.1 | Wheat | mitochondrion | 40.38 | 33.13 |
| HORVU7Hr1G120340.1 | Barley | plastid | 44.15 | 32.77 |
| TraesCS4A01G227100.1 | Wheat | mitochondrion | 39.62 | 32.41 |
| TraesCS4D01G086700.1 | Wheat | mitochondrion | 39.25 | 31.9 |
| CDX84898 | Canola | endoplasmic reticulum | 32.45 | 29.76 |
| CDY27638 | Canola | endoplasmic reticulum | 32.45 | 29.76 |
| CDY28894 | Canola | endoplasmic reticulum, golgi | 32.45 | 29.55 |
| CDY12639 | Canola | endoplasmic reticulum, golgi | 32.08 | 29.51 |
| CDY07428 | Canola | endoplasmic reticulum, golgi | 32.08 | 29.21 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 38.87 | 29.1 |
| CDY51186 | Canola | endoplasmic reticulum, plasma membrane | 32.08 | 28.81 |
| Os11t0242600-00 | Rice | mitochondrion | 33.96 | 28.48 |
| EES08266 | Sorghum | mitochondrion | 33.96 | 27.44 |
| CDY13145 | Canola | plastid | 30.19 | 24.39 |
| CDX81329 | Canola | plastid | 28.3 | 24.35 |
| CDX89660 | Canola | plastid | 30.19 | 24.17 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 28.68 | 24.13 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 28.3 | 23.81 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 28.68 | 23.46 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 28.68 | 23.46 |
| CDY62313 | Canola | plastid | 27.92 | 23.12 |
| CDY37228 | Canola | plastid | 27.92 | 22.91 |
| CDY03407 | Canola | plastid | 26.79 | 22.83 |
| CDY34323 | Canola | plastid | 26.04 | 22.33 |
| CDX92660 | Canola | plastid | 24.53 | 20.83 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HJU1 | UniProt:A0A078HJU1 | EnsemblPlants:CDY37946 | ProteinID:CDY37946 | ProteinID:CDY37946.1 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | EnsemblPlantsGene:GSBRNA2T00064973001 | InterPro:IRX15/IRX15L/IGXM | PFAM:PF04669 |
| PANTHER:PTHR31444 | PANTHER:PTHR31444:SF18 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0004EE9E14 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g20650DBnaC02g20650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJU1]
Coordinates
chrLK032412:+:254856..255802
Molecular Weight (calculated)
29434.2 Da
IEP (calculated)
5.191
GRAVY (calculated)
-0.121
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTLQFPIT MKLILSSLAS LVVITLFFIT NTEFSPSSFQ PALDKTIRIS NSSIGTKVHS LESASCGKIP PSLADALIYY AASNTTPQQT LSEISVTKKL
101: DVGVPEPPGT IFLDEDESWI RKIAEKFPSL ESYHVHVQYD TKVRDAAALL SAAIDSEECR PGVASKCELA LKGLPEVVYE TEWDIIVVDA PRRFHEEAPG
201: RMSAIYTAGM IARSRKKGET RAVFVHDVDR TVEDEFSMAF LCRDYMTEQQ GRLRHFTVPS QPPEV
101: DVGVPEPPGT IFLDEDESWI RKIAEKFPSL ESYHVHVQYD TKVRDAAALL SAAIDSEECR PGVASKCELA LKGLPEVVYE TEWDIIVVDA PRRFHEEAPG
201: RMSAIYTAGM IARSRKKGET RAVFVHDVDR TVEDEFSMAF LCRDYMTEQQ GRLRHFTVPS QPPEV
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
Arabidopsis Description
At1g71690 [Source:UniProtKB/TrEMBL;Acc:Q9C9J1]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.