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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
TargetP:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 HORVU2Hr1G084420.1 AT1G27300.1 21798944
AT1G33800.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
AT1G33800.1 HORVU2Hr1G081800.3 AT4G26455.1 21798944
AT1G33800.1 HORVU5Hr1G071910.1 AT4G26455.1 21798944
AT1G33800.1 HORVU7Hr1G048940.3 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 78.99 93.69
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 78.71 93.05
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 78.99 92.16
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 74.51 88.67
Os12t0204500-01 Rice endoplasmic reticulum, golgi 65.27 78.98
EES16857 Sorghum mitochondrion 64.15 75.58
Zm00001d023950_P001 Maize mitochondrion 65.27 75.4
Zm00001d041782_P001 Maize plasma membrane 61.62 73.83
Zm00001d028737_P001 Maize golgi 31.37 66.27
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 44.26 56.63
VIT_12s0035g01340.t01 Wine grape golgi 43.14 54.23
KRH50678 Soybean cytosol 10.64 53.52
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 43.98 53.4
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 41.74 53.02
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 45.66 52.92
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 41.46 52.67
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 44.26 52.67
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 41.18 52.31
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 41.18 52.13
CDX93751 Canola golgi 42.58 51.35
Bra028013.1-P Field mustard golgi 42.58 51.35
CDY15292 Canola golgi 42.58 51.35
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 36.13 51.19
CDY48797 Canola golgi, plasma membrane 42.58 51.18
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 50.7 51.13
AT4G09990.1 Thale cress golgi 41.46 51.03
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 41.46 51.03
Solyc01g103360.2.1 Tomato plasma membrane 39.22 50.91
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 42.3 50.84
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 42.02 50.68
CDX96332 Canola endoplasmic reticulum, extracellular 42.02 50.68
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 39.5 50.36
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 41.46 50.17
AT1G33800.1 Thale cress golgi, plasma membrane 41.74 50.17
PGSC0003DMT400064018 Potato plasma membrane 38.1 49.28
CDX72815 Canola endoplasmic reticulum, extracellular 41.46 49.17
KRH64803 Soybean golgi, plasma membrane 40.34 47.06
Solyc06g064800.1.1 Tomato extracellular, golgi 33.89 45.83
Zm00001d027968_P001 Maize cytosol, mitochondrion, plastid 38.38 44.19
CDY37946 Canola extracellular 32.77 44.15
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 29.13 42.98
HORVU3Hr1G108120.1 Barley extracellular, plasma membrane, vacuole 34.17 41.78
HORVU0Hr1G015370.1 Barley cytosol, extracellular 26.89 40.17
KRH50677 Soybean mitochondrion 11.2 36.36
HORVU2Hr1G089430.1 Barley endoplasmic reticulum, peroxisome, plastid 34.45 36.18
HORVU2Hr1G113560.1 Barley golgi, plasma membrane 30.25 35.88
HORVU7Hr1G100750.3 Barley endoplasmic reticulum 32.21 33.92
Protein Annotations
EnsemblPlants:HORVU7Hr1G120340.1EnsemblPlantsGene:HORVU7Hr1G120340GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0045492InterPro:IRX15/IRX15L/IGXM
InterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF2PFAM:PF04669SEG:segTIGRFAMs:TIGR01627
TMHMM:TMhelixUniParc:UPI000B477179UniProt:A0A287Y0H7MapMan:21.2.2.2.3::
Description
No Description!
Coordinates
chrchr7H:+:651190889..651192744
Molecular Weight (calculated)
38910.6 Da
IEP (calculated)
9.064
GRAVY (calculated)
-0.100
Length
357 amino acids
Sequence
(BLAST)
001: YQNLQLSCPH HQTLSSHFQK VKKYPSPIFQ PSSSPINPSR TKNRVARLSW WLPVRASMSS PVHARKALHL FSMKAKLQSF LGLRLLVVAA LAAFLLLFSA
101: RTLFSTSSPG PAASHLRGGA GDDGTCSKLP APVADALVHY AASNVTPQQT AAEIGVSLRV LQRRSPCNFL VFGLGLDSPM WAALNHGGRT VFLEEDASWI
201: ASVRSKHPGL ESYHVVYDTR VTEADDLMSL RDHPGCTAQP DLAAAAEASC RLALRGLPAA FHEVEWDLVM VDAPTGWTPE APGRMGAIYT AGMVARARRP
301: GDGATDVFVH DVDRTVEDRF SKAFLCDAYL AEQVGRIRHF VIPSHREKPG TPFCPLN
Best Arabidopsis Sequence Match ( AT4G09990.1 )
(BLAST)
001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF
Arabidopsis Description
GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.