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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:plastid, secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:golgi
TargetP:secretory
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G67210.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G513800.1 Wheat golgi, plastid 96.01 91.46
TraesCS2A01G512400.1 Wheat golgi 95.35 90.82
TraesCS2B01G540300.1 Wheat golgi 94.35 89.87
Os04t0649900-01 Rice mitochondrion 81.4 77.04
KXG27192 Sorghum golgi, mitochondrion, plastid 80.73 74.31
Zm00001d002066_P001 Maize plasma membrane 79.73 71.64
HORVU0Hr1G015370.1 Barley cytosol, extracellular 49.17 61.92
GSMUA_Achr9P25260_001 Banana golgi 55.81 51.22
HORVU7Hr1G100750.3 Barley endoplasmic reticulum 57.48 51.03
VIT_03s0063g00030.t01 Wine grape plastid 36.88 50.45
GSMUA_Achr10P... Banana extracellular, plasma membrane, plastid 47.84 50.0
GSMUA_Achr8P03360_001 Banana golgi 53.49 49.09
GSMUA_Achr6P29610_001 Banana endoplasmic reticulum, golgi, plastid 52.49 48.47
PGSC0003DMT400065494 Potato golgi, plasma membrane, plastid 45.18 45.03
VIT_07s0031g00110.t01 Wine grape golgi 45.85 44.52
KRH77040 Soybean mitochondrion 44.19 43.75
KRH50341 Soybean golgi, plastid 45.18 43.73
CDX81329 Canola plastid 44.52 43.51
KRH28432 Soybean mitochondrion 44.19 43.18
CDY12819 Canola golgi, mitochondrion, plasma membrane, plastid 44.85 42.86
Solyc02g093090.1.1 Tomato extracellular, nucleus 43.85 42.86
Bra012143.1-P Field mustard plastid 44.52 42.54
PGSC0003DMT400064322 Potato plastid 43.52 42.53
CDY01429 Canola golgi, mitochondrion, plasma membrane, plastid 44.19 42.22
AT5G67210.1 Thale cress endoplasmic reticulum, golgi, mitochondrion, plastid 44.19 41.96
PGSC0003DMT400066571 Potato endoplasmic reticulum, golgi, mitochondrion, plastid 43.19 41.4
Solyc01g107800.2.1 Tomato endoplasmic reticulum, golgi, mitochondrion, plastid 42.52 40.76
KRH70689 Soybean plastid 43.52 40.56
KRH04549 Soybean plastid 42.19 40.32
Bra013107.1-P Field mustard plastid 43.85 40.24
KRH57814 Soybean mitochondrion 42.19 40.19
CDY13145 Canola plastid 43.52 39.94
Bra036059.1-P Field mustard endoplasmic reticulum, golgi, plastid 42.86 39.81
Bra039840.1-P Field mustard plastid 42.86 39.69
CDY37228 Canola plastid 42.52 39.63
CDY30600 Canola endoplasmic reticulum, golgi 42.52 39.51
CDY17753 Canola endoplasmic reticulum, golgi 42.52 39.51
AT3G50220.1 Thale cress endoplasmic reticulum, golgi 42.19 39.44
CDY62313 Canola plastid 41.86 39.38
CDX89660 Canola plastid 43.19 39.27
AT2G15440.1 Thale cress plastid 42.52 38.91
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 35.22 35.33
HORVU3Hr1G108120.1 Barley extracellular, plasma membrane, vacuole 30.56 31.51
HORVU7Hr1G120340.1 Barley plastid 35.88 30.25
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 35.22 29.94
HORVU2Hr1G089430.1 Barley endoplasmic reticulum, peroxisome, plastid 30.23 26.76
Protein Annotations
EnsemblPlants:HORVU2Hr1G113560.1EnsemblPlantsGene:HORVU2Hr1G113560GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF3
PFAM:PF04669SEG:segTIGRFAMs:TIGR01627TMHMM:TMhelixUniParc:UPI000B480696UniProt:A0A287JHS3
MapMan:35.1:::::
Description
No Description!
Coordinates
chrchr2H:+:729178206..729179717
Molecular Weight (calculated)
32505.3 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.057
Length
301 amino acids
Sequence
(BLAST)
001: AAATGHRRVL LLVFASCFAF ATLLTFLYTS SGFASASSSS VSRLGSSSSS PPGAAAALPL PVFDALVHYA SFSNATHRMT DTDIRAISAI LRARGPCNLL
101: VFGLGAESPL WLALNHGGRT VYLDENEFYV KYLEPRHPGL EAYDVSYTTK VRDFRDLLEA ARGSRAAECR PVQNLLFSEC RLAINDLPNE LYDVPWDVVL
201: IDGPSGWNPN SPGRMPSIFT TAVLARSGAT AAKGPTDVLV HDFNFEVEQV LSKEFLCDEN RVAGSGTNSL AHFVIRPGGP ADAFCPGQDS RATSEEKTRR
301: K
Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.