Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 3
- endoplasmic reticulum 2
- nucleus 1
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77040 | Soybean | mitochondrion | 94.16 | 95.39 |
| KRH57814 | Soybean | mitochondrion | 82.14 | 80.06 |
| KRH04549 | Soybean | plastid | 81.17 | 79.37 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 72.4 | 71.94 |
| PGSC0003DMT400064322 | Potato | plastid | 68.51 | 68.51 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 67.86 | 67.86 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 66.23 | 67.55 |
| CDX81329 | Canola | plastid | 65.26 | 65.26 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 66.56 | 64.67 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 67.86 | 64.51 |
| Bra012143.1-P | Field mustard | plastid | 65.91 | 64.44 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 67.21 | 64.29 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 67.53 | 64.2 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 67.53 | 64.2 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 65.58 | 64.13 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 65.58 | 64.13 |
| KRH50341 | Soybean | golgi, plastid | 55.19 | 54.66 |
| KRH70689 | Soybean | plastid | 55.19 | 52.63 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 37.66 | 48.54 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 44.16 | 47.22 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 49.35 | 46.34 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 49.35 | 46.34 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 43.18 | 44.19 |
| OQU84413 | Sorghum | golgi, mitochondrion | 45.45 | 43.75 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 46.1 | 43.56 |
| TraesCS2A01G512400.1 | Wheat | golgi | 44.48 | 43.35 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 44.48 | 43.35 |
| Zm00001d014532_P001 | Maize | plasma membrane | 45.13 | 43.3 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.81 | 42.72 |
| TraesCS2B01G540300.1 | Wheat | golgi | 43.83 | 42.72 |
| Os04t0649900-01 | Rice | mitochondrion | 42.86 | 41.51 |
| EER88850 | Sorghum | plastid | 44.48 | 41.27 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 43.51 | 40.85 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 44.81 | 40.71 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 45.13 | 40.64 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 42.86 | 40.37 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 44.48 | 40.18 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 42.53 | 40.06 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 43.18 | 40.06 |
| Zm00001d002066_P001 | Maize | plasma membrane | 43.51 | 40.0 |
| Os06t0687600-00 | Rice | golgi | 43.51 | 39.88 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 41.23 | 37.46 |
| KRH50678 | Soybean | cytosol | 7.79 | 33.8 |
| Os02t0158500-00 | Rice | plastid | 42.21 | 33.16 |
| KRH06044 | Soybean | endoplasmic reticulum, golgi, vacuole | 29.87 | 32.86 |
| KRH06938 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 30.84 | 32.09 |
| KRH31488 | Soybean | endoplasmic reticulum, golgi | 29.55 | 32.04 |
| KRH42675 | Soybean | endoplasmic reticulum | 29.22 | 31.47 |
| KRG94533 | Soybean | golgi, mitochondrion | 31.17 | 31.17 |
| KRH58773 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 27.92 | 31.05 |
| KRH64803 | Soybean | golgi, plasma membrane | 29.55 | 29.74 |
| KRG97408 | Soybean | plastid | 28.9 | 27.81 |
| KRH57238 | Soybean | golgi | 26.3 | 27.74 |
| KRH63768 | Soybean | plastid | 25.32 | 26.71 |
| KRH54181 | Soybean | plastid | 25.97 | 26.32 |
| KRH03967 | Soybean | vacuole | 28.25 | 26.28 |
| KRH50677 | Soybean | mitochondrion | 9.09 | 25.45 |
Protein Annotations
| EntrezGene:100817866 | MapMan:35.1 | EMBL:ACUP02006750 | EMBL:BT093847 | UniProt:C6T8P4 | EnsemblPlantsGene:GLYMA_11G053200 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | EnsemblPlants:KRH28432 | ProteinID:KRH28432 |
| ProteinID:KRH28432.1 | PFAM:PF04669 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 |
| TMHMM:TMhelix | UniParc:UPI0001B16232 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:3998778..4000761
Molecular Weight (calculated)
34590.9 Da
IEP (calculated)
7.168
GRAVY (calculated)
-0.311
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNTNSNTKL ILLHPYIQKQ GSSNRLWLLA FISFFTLVFL ATLIYTRDTT SSTTTTTSST PLSSFTNTLL SSTVINTLLH YASKSNDTFH MPHSDLKTIS
101: DMLRKCPSPC NFLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYFEEKH PEIDAYDVAY TTKRSELKEL IASAKEQVGN ECRPVQNLLF SECKLGLNDL
201: PNHVYEVDWD VILVDGPRGD WPDAPGRMSP IFTAGVLARS KKGGNPKTHV FVHDFSGKVE KVSGNEFLCK ENLVEATHSL GHYVLEKMDE SSVQYCKNHS
301: SGFASSSS
101: DMLRKCPSPC NFLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYFEEKH PEIDAYDVAY TTKRSELKEL IASAKEQVGN ECRPVQNLLF SECKLGLNDL
201: PNHVYEVDWD VILVDGPRGD WPDAPGRMSP IFTAGVLARS KKGGNPKTHV FVHDFSGKVE KVSGNEFLCK ENLVEATHSL GHYVLEKMDE SSVQYCKNHS
301: SGFASSSS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.