Factsheet for TraesCS2B01G540300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G513800.1	Wheat	golgi, plastid	98.42	98.42
TraesCS2A01G512400.1	Wheat	golgi	96.84	96.84
HORVU2Hr1G113560.1	Barley	golgi, plasma membrane	89.87	94.35
Os04t0649900-01	Rice	mitochondrion	79.75	79.25
KXG27192	Sorghum	golgi, mitochondrion, plastid	79.11	76.45
Zm00001d002066_P001	Maize	plasma membrane	79.43	74.93
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	56.96	52.63
GSMUA_Achr9P25260_001	Banana	golgi	54.11	52.13
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	46.84	51.39
GSMUA_Achr8P03360_001	Banana	golgi	52.53	50.61
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	51.9	50.31
VIT_03s0063g00030.t01	Wine grape	plastid	34.49	49.55
TraesCS6B01G160200.1	Wheat	mitochondrion	51.58	49.1
VIT_07s0031g00110.t01	Wine grape	golgi	44.94	45.81
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	43.35	45.36
KRH50341	Soybean	golgi, plastid	44.3	45.02
KRH77040	Soybean	mitochondrion	43.04	44.74
CDX81329	Canola	plastid	43.35	44.48
KRH28432	Soybean	mitochondrion	42.72	43.83
Solyc02g093090.1.1	Tomato	extracellular, nucleus	42.72	43.83
PGSC0003DMT400064322	Potato	plastid	42.41	43.51
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	43.04	43.17
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	42.72	42.99
Bra012143.1-P	Field mustard	plastid	42.72	42.86
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	42.41	42.54
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	42.41	42.27
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	41.46	41.72
KRH70689	Soybean	plastid	42.41	41.49
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	42.09	41.05
CDY30600	Canola	endoplasmic reticulum, golgi	41.77	40.74
CDY17753	Canola	endoplasmic reticulum, golgi	41.77	40.74
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	41.46	40.68
KRH04549	Soybean	plastid	40.51	40.63
KRH57814	Soybean	mitochondrion	40.51	40.51
Bra013107.1-P	Field mustard	plastid	41.77	40.24
CDY13145	Canola	plastid	41.46	39.94
Bra039840.1-P	Field mustard	plastid	40.82	39.69
CDY37228	Canola	plastid	40.51	39.63
CDX89660	Canola	plastid	41.46	39.58
CDY62313	Canola	plastid	39.56	39.06
AT2G15440.1	Thale cress	plastid	39.87	38.3
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	35.76	37.54
TraesCS5B01G313900.1	Wheat	golgi, unclear	35.44	37.33
TraesCS4B01G089200.1	Wheat	mitochondrion	33.23	32.51
TraesCS1B01G382900.1	Wheat	plasma membrane, vacuole	27.53	31.75
TraesCS3B01G545900.1	Wheat	extracellular	28.8	31.06
TraesCS2B01G398500.1	Wheat	extracellular	28.8	30.85

Protein Annotations

EnsemblPlants:TraesCS2B01G540300.1	EnsemblPlantsGene:TraesCS2B01G540300	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF3
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr2B:-:736756338..736757288

Molecular Weight (calculated)

33740.9 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.018

Length

316 amino acids

Sequence
(BLAST)

001: MKSIGSRDKL QAAAAATGPR RVLLLVFASC FAFATLLTFL YTSSGFASAA SSGSRLAAGS SSGAAAGSGA ALPLPVFDAL VHYASFSNAT HRMTDTDIRA
101: ISAILRARGP CNLLVFGLGA ESPLWLALNH GGRTVYLDEN EFYVKYLEPR HPGLEAYDVS YTTKVRDFRD LLEAARGSRA AECRPVQNLL FSECRLAIND
201: LPNELYDVPW DVVLIDGPSG WNPNSPGRMA SVFTTAVLAR SGATAAKGPT DVLVHDFNFE VEQVLSKEFL CDENRVAGSG TPSLAHFVIR SGGPADAFCA
301: AGQDSRATPE EKTRRK

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.