Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- golgi 2
- plasma membrane 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013107.1-P | Field mustard | plastid | 81.46 | 81.71 |
| CDY13145 | Canola | plastid | 80.55 | 80.79 |
| CDX89660 | Canola | plastid | 81.16 | 80.66 |
| CDY62313 | Canola | plastid | 75.38 | 77.5 |
| CDY37228 | Canola | plastid | 74.77 | 76.16 |
| Bra039840.1-P | Field mustard | plastid | 74.77 | 75.69 |
| KRH50341 | Soybean | golgi, plastid | 49.54 | 52.41 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 47.42 | 49.68 |
| KRH70689 | Soybean | plastid | 48.63 | 49.54 |
| Solyc01g107800.2.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.29 | 47.45 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 44.68 | 46.37 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 33.13 | 45.61 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 41.95 | 42.86 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 38.91 | 42.52 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 41.34 | 41.46 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 35.56 | 40.62 |
| Os04t0649900-01 | Rice | mitochondrion | 38.91 | 40.25 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 40.12 | 40.24 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 38.6 | 40.19 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 39.82 | 40.18 |
| TraesCS2A01G512400.1 | Wheat | golgi | 38.3 | 39.87 |
| TraesCS2B01G540300.1 | Wheat | golgi | 38.3 | 39.87 |
| Zm00001d014532_P001 | Maize | plasma membrane | 38.6 | 39.56 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 39.21 | 39.45 |
| EER88850 | Sorghum | plastid | 38.91 | 38.55 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 39.21 | 38.05 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 39.21 | 37.83 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 39.21 | 37.72 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 37.08 | 37.31 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 37.08 | 37.2 |
| OQU84413 | Sorghum | golgi, mitochondrion | 36.17 | 37.19 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 36.17 | 36.84 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 37.08 | 36.75 |
| Zm00001d002066_P001 | Maize | plasma membrane | 37.39 | 36.72 |
| Os06t0687600-00 | Rice | golgi | 37.39 | 36.61 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 37.08 | 35.99 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 27.36 | 31.91 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 27.96 | 31.19 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 27.36 | 30.93 |
| AT4G09990.1 | Thale cress | golgi | 27.05 | 30.69 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 27.66 | 30.64 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 26.44 | 30.1 |
| Os02t0158500-00 | Rice | plastid | 35.26 | 29.59 |
| AT4G24910.1 | Thale cress | plastid | 27.66 | 28.89 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816036 | UniProt:A0A178VWF3 | ProteinID:AAD22280.1 | ProteinID:AEC06401.1 | ArrayExpress:AT2G15440 |
| EnsemblPlantsGene:AT2G15440 | RefSeq:AT2G15440 | TAIR:AT2G15440 | RefSeq:AT2G15440-TAIR-G | EnsemblPlants:AT2G15440.1 | TAIR:AT2G15440.1 |
| EMBL:AY087196 | Unigene:At.64934 | EMBL:BT028994 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | RefSeq:NP_565374.1 | ProteinID:OAP10146.1 | PFAM:PF04669 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF0 | InterPro:Polysacc_synth_dom |
| UniProt:Q9SJN8 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI00000A4432 | SEG:seg | : |
Description
At2g15440 [Source:UniProtKB/TrEMBL;Acc:Q9SJN8]
Coordinates
chr2:-:6743528..6744835
Molecular Weight (calculated)
36392.8 Da
IEP (calculated)
6.183
GRAVY (calculated)
-0.119
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSNTNTNLI LFHHHSPLTS KSPSAVAAAN HHRFLFIFFL SFFTLLFSFS LFSSSIHSTT SSHSLSSSPS SSSLPPPVLA ALLHYTSSSP PNTSMSFLEL
101: STISNIIHSH GPACNLLIFG LTHESLLWRS INFQGRTVFV DESPYSVSKF EQSNPGVEAY EVVYSTKVSQ AKKLLGYYKT RPECRPVQNL LFSDCKLGIN
201: DLPNFVYEID WDVILIDGPR GYASDSPGRM APIFTSAVLA KSKDFGTKTK KTDVLVHEFG RKIERVYSEE FLCEENLIEV VGDLGHFVVA AAEERESYGD
301: GFCRNSTRLS ESFTAVSGGD EEKVGVDDE
101: STISNIIHSH GPACNLLIFG LTHESLLWRS INFQGRTVFV DESPYSVSKF EQSNPGVEAY EVVYSTKVSQ AKKLLGYYKT RPECRPVQNL LFSDCKLGIN
201: DLPNFVYEID WDVILIDGPR GYASDSPGRM APIFTSAVLA KSKDFGTKTK KTDVLVHEFG RKIERVYSEE FLCEENLIEV VGDLGHFVVA AAEERESYGD
301: GFCRNSTRLS ESFTAVSGGD EEKVGVDDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.