Subcellular Localization
min:
: max
Winner_takes_all: golgi, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- endoplasmic reticulum 3
- extracellular 2
- golgi 3
- plasma membrane 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17753 | Canola | endoplasmic reticulum, golgi | 93.17 | 92.59 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 92.55 | 91.98 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 92.24 | 91.67 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 83.85 | 85.17 |
| KRH77040 | Soybean | mitochondrion | 64.29 | 68.09 |
| KRH28432 | Soybean | mitochondrion | 64.29 | 67.21 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 63.04 | 65.48 |
| KRH04549 | Soybean | plastid | 62.73 | 64.13 |
| KRH57814 | Soybean | mitochondrion | 62.11 | 63.29 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 59.01 | 62.91 |
| PGSC0003DMT400064322 | Potato | plastid | 59.63 | 62.34 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 58.39 | 61.04 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 36.02 | 48.54 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 47.52 | 46.65 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 41.61 | 46.53 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 47.2 | 46.34 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 45.65 | 45.09 |
| Zm00001d014532_P001 | Maize | plasma membrane | 44.41 | 44.55 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.41 | 44.27 |
| OQU84413 | Sorghum | golgi, mitochondrion | 43.79 | 44.06 |
| EER88850 | Sorghum | plastid | 44.72 | 43.37 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 43.79 | 42.99 |
| Os06t0687600-00 | Rice | golgi | 44.1 | 42.26 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 42.86 | 42.2 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 39.44 | 42.19 |
| AT2G15440.1 | Thale cress | plastid | 42.86 | 41.95 |
| TraesCS2A01G512400.1 | Wheat | golgi | 40.99 | 41.77 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 40.99 | 41.77 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 43.79 | 41.59 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 44.1 | 41.52 |
| TraesCS2B01G540300.1 | Wheat | golgi | 40.68 | 41.46 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 43.79 | 41.35 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 42.24 | 40.96 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 41.3 | 40.67 |
| Zm00001d002066_P001 | Maize | plasma membrane | 41.61 | 40.0 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 41.61 | 39.53 |
| Os04t0649900-01 | Rice | mitochondrion | 38.82 | 39.31 |
| Os02t0158500-00 | Rice | plastid | 41.61 | 34.18 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 29.5 | 32.2 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 27.64 | 31.56 |
| AT4G09990.1 | Thale cress | golgi | 28.26 | 31.38 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 27.95 | 30.93 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 28.26 | 30.64 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 27.02 | 30.1 |
| AT4G24910.1 | Thale cress | plastid | 27.95 | 28.57 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824184 | ProteinID:AEE78642.1 | EMBL:AK221924 | ArrayExpress:AT3G50220 | EnsemblPlantsGene:AT3G50220 |
| RefSeq:AT3G50220 | TAIR:AT3G50220 | RefSeq:AT3G50220-TAIR-G | EnsemblPlants:AT3G50220.1 | TAIR:AT3G50220.1 | EMBL:AY087437 |
| Unigene:At.1419 | ProteinID:CAB62301.1 | EMBL:DQ446752 | EMBL:DQ653142 | GO:GO:0000139 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009834 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | RefSeq:NP_190591.1 | PFAM:PF04669 | PO:PO:0000230 | PO:PO:0007611 |
| PO:PO:0009032 | PO:PO:0009046 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | UniProt:Q9SNE5 |
| TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000009F81F | SEG:seg | : | : |
Description
IRX15Protein IRREGULAR XYLEM 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNE5]
Coordinates
chr3:-:18617424..18618816
Molecular Weight (calculated)
35808.5 Da
IEP (calculated)
7.340
GRAVY (calculated)
-0.215
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGSGNTNT KLILLHPYIQ KQTSTTRLWL LAFVSFFTIV FLLTLLYTRD TIPSKNTSVA AAVAAVVTGG STPSASSPIS NSNLPTSAIN ALLHYASRSN
101: DSFHMSYGEM KSISDVLRRC APPCNLLVFG LTHETLLWKS LNHNGRTVFI EENRYYAAYF EEIHPEIDVF DVQYTTKAHE AGELVTAAKE AAGNECRPVQ
201: NLLFSDCKLG LNDLPNHVYD VDWDVIFVDG PRGDAHEGPG RMSSIFTAAV LARSKKGGTP KTHVFVHDYY RDVERLCGDE FLCRENLVES NDLLAHYVLD
301: KMDKNSTKFC NGRKKRSVSS LS
101: DSFHMSYGEM KSISDVLRRC APPCNLLVFG LTHETLLWKS LNHNGRTVFI EENRYYAAYF EEIHPEIDVF DVQYTTKAHE AGELVTAAKE AAGNECRPVQ
201: NLLFSDCKLG LNDLPNHVYD VDWDVIFVDG PRGDAHEGPG RMSSIFTAAV LARSKKGGTP KTHVFVHDYY RDVERLCGDE FLCRENLVES NDLLAHYVLD
301: KMDKNSTKFC NGRKKRSVSS LS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.