Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- plasma membrane 2
- nucleus 1
- extracellular 1
- golgi 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064322 | Potato | plastid | 98.38 | 98.38 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 72.73 | 72.26 |
| KRH77040 | Soybean | mitochondrion | 68.83 | 69.74 |
| KRH28432 | Soybean | mitochondrion | 67.86 | 67.86 |
| KRH57814 | Soybean | mitochondrion | 68.83 | 67.09 |
| KRH04549 | Soybean | plastid | 68.51 | 66.98 |
| CDX81329 | Canola | plastid | 62.01 | 62.01 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 63.64 | 61.83 |
| Bra012143.1-P | Field mustard | plastid | 62.99 | 61.59 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 62.99 | 61.59 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 62.66 | 61.27 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 61.04 | 58.39 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 61.04 | 58.02 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 61.04 | 58.02 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 61.04 | 58.02 |
| Solyc01g107800.2.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 53.57 | 52.55 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 37.01 | 47.7 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 50.0 | 46.95 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 43.83 | 46.88 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 48.7 | 45.73 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 48.05 | 45.4 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 42.86 | 43.85 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 44.48 | 43.35 |
| TraesCS2B01G540300.1 | Wheat | golgi | 43.83 | 42.72 |
| TraesCS2A01G512400.1 | Wheat | golgi | 43.83 | 42.72 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 45.13 | 42.51 |
| OQU84413 | Sorghum | golgi, mitochondrion | 43.83 | 42.19 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.16 | 42.11 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 44.81 | 42.07 |
| Zm00001d014532_P001 | Maize | plasma membrane | 43.83 | 42.06 |
| EER88850 | Sorghum | plastid | 45.13 | 41.87 |
| Solyc11g020540.1.1 | Tomato | cytosol | 9.09 | 41.79 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 44.16 | 41.59 |
| Os04t0649900-01 | Rice | mitochondrion | 42.53 | 41.2 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 43.83 | 40.66 |
| Zm00001d002066_P001 | Maize | plasma membrane | 43.83 | 40.3 |
| Os06t0687600-00 | Rice | golgi | 43.83 | 40.18 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 44.16 | 39.88 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 43.83 | 39.82 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 44.16 | 39.77 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 40.91 | 37.17 |
| Solyc01g103360.2.1 | Tomato | plasma membrane | 30.52 | 34.18 |
| Os02t0158500-00 | Rice | plastid | 43.18 | 33.93 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 28.25 | 32.95 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 30.84 | 32.31 |
| Solyc07g015920.1.1 | Tomato | extracellular | 27.27 | 30.55 |
| Solyc11g020470.1.1 | Tomato | cytosol | 14.94 | 30.46 |
| Solyc03g110890.1.1 | Tomato | plasma membrane, vacuole | 24.03 | 24.58 |
Protein Annotations
| MapMan:35.1 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | UniProt:K4BDA5 |
| PFAM:PF04669 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | EnsemblPlantsGene:Solyc02g093090.1 | EnsemblPlants:Solyc02g093090.1.1 |
| TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000276830D | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:54018769..54019695
Molecular Weight (calculated)
34971.8 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.249
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNTIGSSTK LILLHPYIQK QGSSNRFWTL AFISILTLAF LLTLIYTRES KITTSIAVAS TITSTSTPPL SKAVARALVH YASNSNNTEH MSYTDIKHIA
101: DVLQKCSQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IAGVKEQVRN ECKPVQNLLF SECKLGLNDL
201: PNQFYEVDWD VILIDGPRGY WPEAPGRMSA IFTASVLARS KKGGNPKTHI FVHDFHQQVD RITSDEFLCK ENLVKSMDML GHFVLERMDA NNFQFCRNHN
301: STTANSSS
101: DVLQKCSQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IAGVKEQVRN ECKPVQNLLF SECKLGLNDL
201: PNQFYEVDWD VILIDGPRGY WPEAPGRMSA IFTASVLARS KKGGNPKTHI FVHDFHQQVD RITSDEFLCK ENLVKSMDML GHFVLERMDA NNFQFCRNHN
301: STTANSSS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.